Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01242 atGGGAAGGCCTCCTTGCTGTGATAAGTCCAATGTGAAAAGGGGTCTCTGGACTCCTGAAGAGGATGCAAAAATACTTGCTTACATTTCAAATCATGGCACTGGAAATTGGACATTGGTTCCCAAGAAAGCAGGATTGAACAGGTGTGGGAAGAGCTGCAGGCTAAGATGGACTAATTATCTTAGACCTGATCTCAAGCATGAAAGCTTCACTCCCCAAGAAGAAGAGCTTATAATTAACCTTCATGAAGCTATAGGAAGCAGATGGTCTTTAATCGCGAAGCGATTACCCGGGAGAACTGACAACGATGTGAAGAATTACTGGAACACAAAGCTGAGGAAGAAGCTCATGAAGATGGGAATTGACCCAGTAACCCATAAGCCTGTATCAAAGGTCATTTCTGATTTGGGATGCATAAGTGGCTTTCCAAGCACTGGAAACAAAATGGGTCTTGTTAATAAAAACCTATGTAACATGCTACCAACCATGGCTGAACCAACTGTTGCCCAACACTTACTAGGACCTGTCAATGCAGAAACCAAGATAAAGCCATTGGCAGATCAAGCACAGTCACAAGATCAAGTTCGTTCATGGGAACACCAAGAGCAGTTCCAAGTCGCAAGCCAAGATAATTTCCAGCCACATGTCTTCAATGAAGCtacatcttcttcttcatcgtCTTCATCATCCTCTAATCTCCCGCGATTAAGCTCGCCTCGCTCCTTTTCTTACCTAACATCTGAGGAACAAGCTGCTCCTCCTTGTTCATCCTTTGATTGGAGTGAGTTTCTTCTCAGCGACCCTTTTATGTGCATAGAGCCTCAGCAGCATGGCTTGCAGGGTGTTTTGTCATCACTGAGCCCCTCAGTTCTAATGCAAAGTGAAATCCagtgttcaaaaaaaaatgacaatggCAAGAAAGGAGCTGCAAGTGAAAATTGTGGGAATGTTGCTTGTAAAGCAAGCTTGGGATACCAAATTAACACTTCATCTTCTGGGAATTCCTTCGTGGATGATATTTTGGACAGGGACAACGAGATAAGGGCAGCATTCCCTCAACTCTTGGATGGATATTCTGATTATTA 1085 0.4212 MGRPPCCDKSNVKRGLWTPEEDAKILAYISNHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLKHESFTPQEEELIINLHEAIGSRWSLIAKRLPGRTDNDVKNYWNTKLRKKLMKMGIDPVTHKPVSKVISDLGCISGFPSTGNKMGLVNKNLCNMLPTMAEPTVAQHLLGPVNAETKIKPLADQAQSQDQVRSWEHQEQFQVASQDNFQPHVFNEATSSSSSSSSSSNLPRLSSPRSFSYLTSEEQAAPPCSSFDWSEFLLSDPFMCIEPQQHGLQGVLSSLSPSVLMQSEIQCSKKNDNGKKGAASENCGNVACKASLGYQINTSSSGNSFVDDILDRDNEIRAAFPQLLDGYSDY 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01242 361 CDD SANT 69 112 IPR001005 -
Bva03g01242 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Bva03g01242 361 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Bva03g01242 361 PANTHER F14D16.11-RELATED 1 361 - -
Bva03g01242 361 CDD SANT 17 61 IPR001005 -
Bva03g01242 361 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Bva03g01242 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Bva03g01242 361 Gene3D - 68 131 - -
Bva03g01242 361 Gene3D - 7 67 - -
Bva03g01242 361 PANTHER F14D16.11-RELATED 1 361 - -
Bva03g01242 361 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Bva03g01242 361 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bva03g01242 361 SMART sant 13 63 IPR001005 -
Bva03g01242 361 SMART sant 66 114 IPR001005 -
Bva03g01242 361 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01242 Bva-Chr3 12134242 12136229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01242 1 361 MYB Transcription Factor Family AT3G28470 48.901 1.77e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva03g01242 Myb_DNA-binding 3.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01242 K09422 - gmx:100815077 438.343