Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01231 ATGGATAGTGAGGATCAGAAAGCAAGTAGCGTGGCCATGGttaacaagaagaagaaaagtgggTCTTTCCGATCCATTTTCATGCATGCTGATAGCAGAGATTGGTTGCTGATGGCTTTAGGCTTCCTCGGATCCGTGGGTGATGGATTCTCCACCCCTCTTGTGTTGTTTGTCACTAGCCACTTGATGAACAATGTTGGGAGTGCGATTTCAAAGGAAGGAAACGATTTCCTCCGTAATATTAACAAGAATGCACTGGTTCTGTGTTATGTGGCGTGTGGCTCTTTCGTGGTTTGCTTCCTCGAGGGCTTTTGTTGGACAAGAACGGGAGAGAGACAAGCTGCAAAAATGAGAGCAAGGTATTTGAAAGCAATTCTAAGACAAGAAGTGGCATACTTTGATTTGCACGTAACTAGCACATCTGAAGTTATCACCAGCGTCTCAAATGATAGCCTAATTATTCAAGATTGCCTTAGTGAAAAGGTCCCAAATTTCTTGATGAATTTCTCAACGTTGATTGGGAGCTACATAGTGGCTTTTGCAATGCTTTGGAGATTGGCTATTGTGGGGCTCCCTTTCGTGGTCCTTCTAGTAATTCCAGGGTTAATGTATGGAAGAACTTTGATGGAATTGGCGAGGAAAATAAAGGGAGAGTATAACCAAGCCGGTACAATAGCAGAGCAAGCAATATCTTCCATCAGAACCGTTTATTCCTTTGTCGGCGAGAGCAAGACCATGGATGCTTTCTCTGATGCTCTCCAAGGCTCGGTTAAGTTGGGCTTGAGACAAGGCTTGGCTAAAGGCTTAGCCATCGGAAGCAATGGTGTTGTCTTTGCCATATGGTCTTTCATGTGCTTTTATGGGAGCAGACTCGTCATGTACCATGGCGCCGAAGGCGGCACCGTTTTCATGGTTGGAGCAGCCATGGCTCTGGGTGGATTAACATTAGGTGCTTGTTTATCCAACATGAAGCACTTCTCAGAAGCAACTTCAGCAGGGGAAAGAATAATGGAAGTGATTAAAAGGGTGCCCAAGATTGATTCCGAAAATACAAAAGGGGAGATTTTGGAGAAGGTCTCAGGGGAAGTGGAATTTGATCATGTAGATTTTGCATACCCATCAAGGCCTCATAGCATTATTCTGAACCATTTTTGCCTAAAGATTCCAGCAGGGAAGACAGTGGCATTGGTGGGTGGGAGTGGCTCAGGAAAATCTACAGTGATATCACTTATGCAGAGGTTTTATGACCCACTTGGGGGAGAGATACGTGTTGATGGAGTGGCCATTCAGAGCCTGCAGCTCAAGTGGGTGAGATCACAGATGGGGTTAGTGAGCCAAGAGCCTGCACTGTTTGCGACCAGCATTAAAGAGAACATACTTTTTGGAAAAGAGGATGCCACATACGAGGAGGTTGTGGAGGCTGCCAAAGCTTCCAAtgctcataattttatttcacagTTGCCTCAAGGATACGATACCCAGGTTGGTGAAAGAGGTGTTCAAATGTCTGGGGGACAAAAACAAAGGATCGCAATTGCACGGGCAATAATCAAGAAACccataattcttttattggaTGAAGCAACCAGTGCATTAGACTCTGAATCTGAACGTGTTGTCCAAGAAGCTCTAGACAAAGCAACGGTGGGCCGTACTACGATCATCATCGCTCACCGTTTATCCACCATCCAAAACGCAGACATCATTGCAGTAGTTCAAAACAAGAGAGTCATGGAGATGGGGTCTCACGATGAGCTCATAAAAAACGACAATGGACTCTACACCTCGCTCGTTCGTCTCCAGCAAACTGAGAAATCAAAAGTGCAAGACGACACCATCTCCAACCCAAATTCTATTGCAAACAAAGACATCTACAATACTAGTAGTCGTAGACTCTCTCTGGTAAGTCGTTCTAGCTCTGCTAATTCAATTGCACCCAGTCGAGCTTCCTATGGTGACGAAGAAGTGGATGACGTGGTGTGTGAAGAAACGAAATTCCATGTTCCATTGTTTAAGAGGTTGATTCTTTTGATTCTGCCGGAGTGGAAGCATGCAAGCTTGGGGTGTATGAGTGCGGTATTGTTTGGTGCAGTTCAACCAATTTATGCATTCTCAATGGGTTCCATGATTTCTGTGTATTTCCTGACAAACCATAAAGAGATTAAGGAAAAGACAAGGATATACGCACTGTGTTTTCTGGGCTTAGCTGTCTTCTCTCTGGTTATTAACATATGCCAGCATTATAGTTTTGCATATATGGGAGAGTACTTGACCAAGAGGATTAGAGAGAGAATGCTTTCTAAGATACTCACATTTGAGGTTGGGTGGTTCGATCGGGATGAGAATGCTAGCGGTGCTGTTTGTTCTAGACTTGATAGAGATGCCAGTGTGGTGAGATCGTTAGTGGGAGATCAAATGGCTCTGCTTGTACAAACATTATCAGCTGTGATAATAGCATGCACAATGGGGTTGGTAATTGCATGGAGGCTGGCCATAGTTATGATAGCCGTGCAACCCATTATCATAGTGTGTTTCTATACTAGGCGCGTCCTCCTTAGGAGCATGTCAAGCAAGGCCGTCAAAGCTCAAGACCAAAGTAGCAAACTAGCTGCCGAAGCTGTCTCTAATCTAAGAACTGTTGCTGCCTTCTCTTCCCAAGACCGTATCCTCAAAATGCTCGAAAAAGCCCAAGAAGGCCCAAGTCACGAGAGCATTCGCCAATCTTGGTATGCAGGTATTGGGCTTGGATGCTCTCAAAGCCTCACTTCATGTACTTGGGCCTTGGACTTTTGGTATGGCGGGAAACTCATCTCCCAAGGCTACATCTCAGCTAAAGCTCTACTAGAGACCTTCATGATTTTGGTGAGTACAGGTCGTGTTATTGCTGATGCTGGAAGCATGACCACAGACCTTGCCAAGGGCTCTGATGCTATGAGCTCAGTTTTTACTGTTCTACACAGTTTCACTAGGATTGAACCCGAAGACCCTGAGGGCTATAAGCCCAACAAGATAACGGGCCATTTGGAATTTCACAATGTACATTTTGCATACCCAGCTAGGCccaatttgatgatttttgaAGGGTTTTCAATCAAAATTGCAGCAGGAAAATCAATGGCATTAGTGGGCCAAAGTGGGTCTGGAAAGTCAACCATCATAGGATTAATAGAGAGATTCTATGACCCAATCAAAGGGACAGTGAGCATTGACAACatagatataaaatcatacaaCCTAAGGTCACTAAGAAAACACATTGCATTGGTTAGCCAAGAGCCCATGTTGTTTGGTGGGACCATAAGAGAGAACATTGCATATGGAGCATTAAAGAAAGTTGATGAAGCAGAGGTGATTGAGGCAGCGAGAGCAGCCAACGCTCATGATTTCATCTCTAGTCTTCAGGATGGTTACGATACAGTGTGTGGAGACAGAGGGGTGCAATTGTCGGGTGGTCAAAAGCAAAGGATTGCAATTGCACGCGCTATACTAAAGAACCCAACGGTGCTATTGCTAGATGAAGCAACTAGTGCACTTGATAGTCAATCAGAGAAGGTGGTGCAAGACGCGCTAGAGCGCGTGATGGTGGGGAGAACAAGTGTGGTGGTGGCCCACAGGTTGAGCACCATACAAAATTGTGATGCAATTGCAGTGTTGGACAAGGGAAAGGTGGTGGAGAGAGGGACCCACTCGTCTTTGTTGGCCAAGGGACCAAACGGTGCGTATTACTCCTTGGTTAGTCTACAAAGGAGACCATCCAACAATTGCCACTCGATTAACTA 3779 0.4424 MDSEDQKASSVAMVNKKKKSGSFRSIFMHADSRDWLLMALGFLGSVGDGFSTPLVLFVTSHLMNNVGSAISKEGNDFLRNINKNALVLCYVACGSFVVCFLEGFCWTRTGERQAAKMRARYLKAILRQEVAYFDLHVTSTSEVITSVSNDSLIIQDCLSEKVPNFLMNFSTLIGSYIVAFAMLWRLAIVGLPFVVLLVIPGLMYGRTLMELARKIKGEYNQAGTIAEQAISSIRTVYSFVGESKTMDAFSDALQGSVKLGLRQGLAKGLAIGSNGVVFAIWSFMCFYGSRLVMYHGAEGGTVFMVGAAMALGGLTLGACLSNMKHFSEATSAGERIMEVIKRVPKIDSENTKGEILEKVSGEVEFDHVDFAYPSRPHSIILNHFCLKIPAGKTVALVGGSGSGKSTVISLMQRFYDPLGGEIRVDGVAIQSLQLKWVRSQMGLVSQEPALFATSIKENILFGKEDATYEEVVEAAKASNAHNFISQLPQGYDTQVGERGVQMSGGQKQRIAIARAIIKKPIILLLDEATSALDSESERVVQEALDKATVGRTTIIIAHRLSTIQNADIIAVVQNKRVMEMGSHDELIKNDNGLYTSLVRLQQTEKSKVQDDTISNPNSIANKDIYNTSSRRLSLVSRSSSANSIAPSRASYGDEEVDDVVCEETKFHVPLFKRLILLILPEWKHASLGCMSAVLFGAVQPIYAFSMGSMISVYFLTNHKEIKEKTRIYALCFLGLAVFSLVINICQHYSFAYMGEYLTKRIRERMLSKILTFEVGWFDRDENASGAVCSRLDRDASVVRSLVGDQMALLVQTLSAVIIACTMGLVIAWRLAIVMIAVQPIIIVCFYTRRVLLRSMSSKAVKAQDQSSKLAAEAVSNLRTVAAFSSQDRILKMLEKAQEGPSHESIRQSWYAGIGLGCSQSLTSCTWALDFWYGGKLISQGYISAKALLETFMILVSTGRVIADAGSMTTDLAKGSDAMSSVFTVLHSFTRIEPEDPEGYKPNKITGHLEFHNVHFAYPARPNLMIFEGFSIKIAAGKSMALVGQSGSGKSTIIGLIERFYDPIKGTVSIDNIDIKSYNLRSLRKHIALVSQEPMLFGGTIRENIAYGALKKVDEAEVIEAARAANAHDFISSLQDGYDTVCGDRGVQLSGGQKQRIAIARAILKNPTVLLLDEATSALDSQSEKVVQDALERVMVGRTSVVVAHRLSTIQNCDAIAVLDKGKVVERGTHSSLLAKGPNGAYYSLVSLQRRPSNNCHSIN 1259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01231 1259 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 687 973 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva03g01231 1259 SUPERFAMILY ABC transporter transmembrane region 669 994 IPR036640 GO:0005524|GO:0016021
Bva03g01231 1259 Pfam ABC transporter transmembrane region 687 954 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva03g01231 1259 Pfam ABC transporter transmembrane region 39 304 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva03g01231 1259 Pfam ABC transporter 1028 1176 IPR003439 GO:0005524
Bva03g01231 1259 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 23 1252 IPR039421 -
Bva03g01231 1259 CDD ABC_MTABC3_MDL1_MDL2 1009 1248 - -
Bva03g01231 1259 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1008 1245 IPR003439 GO:0005524
Bva03g01231 1259 SUPERFAMILY ABC transporter transmembrane region 30 344 IPR036640 GO:0005524|GO:0016021
Bva03g01231 1259 Gene3D - 998 1257 IPR027417 -
Bva03g01231 1259 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 599 IPR003439 GO:0005524
Bva03g01231 1259 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 23 1252 - -
Bva03g01231 1259 ProSitePatterns ABC transporters family signature. 1148 1162 IPR017871 GO:0005524
Bva03g01231 1259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 601 IPR027417 -
Bva03g01231 1259 CDD ABC_MTABC3_MDL1_MDL2 363 601 - -
Bva03g01231 1259 CDD ABC_6TM_Pgp_ABCB1_D1_like 38 336 - -
Bva03g01231 1259 Gene3D - 353 602 IPR027417 -
Bva03g01231 1259 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524
Bva03g01231 1259 CDD ABC_6TM_Pgp_ABCB1_D2_like 677 991 - -
Bva03g01231 1259 Pfam ABC transporter 382 530 IPR003439 GO:0005524
Bva03g01231 1259 Gene3D ABC transporter type 1, transmembrane domain 26 976 IPR036640 GO:0005524|GO:0016021
Bva03g01231 1259 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 39 328 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva03g01231 1259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 998 1248 IPR027417 -
Bva03g01231 1259 SMART AAA_5 1035 1228 IPR003593 -
Bva03g01231 1259 SMART AAA_5 390 593 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01231 Bva-Chr3 12055272 12061265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01231 22 1249 Calmodulin-binding Proteins AT2G36910 44.916 0.0 1054
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01231 K05658 - gmx:100807709 1912.12