Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01230 ATGGCATCACACTCACAACAGGCTCAAGACTTTGCATCGTCACAAATCTTTCCCGAAAGCATACAAGTCCTTGCCATTGATGCTAATCCAGTTTGTCTCAGAATTCACAGAGCTTTACTTGAAAAGTGCAAATATAAAGTCATCACAATAGCAGACACAAAAGAAGCACTACACCTCCTTCGGCaaccagaaaacaaaattgatctTGTCCTTTCTCATGTTGTGAGGCATGACAATATGGATGGCTTGGAGCTTATGGAAACCATATCATCCTCTAAAATGGATGTACCCGTAGTCTTGGTTTCAGCAAGAGATGACATGGATTATATCATGAGGGGTCTAAGACATGGAGCTAGTGACTACTTAATAAAACCTGTTCGATTAGCTGATATAAAGAAGCTTTGGTACCAtgttttcaagaaaatgacTGCAGGAACTCCAGCTGGGAATCCATGCAttcccaaaaatataataataataaaagaagaagaagaagatatgcCTAATAGCAAAAGGGTTAGGTGTGAGGAcctaaagaaagaagaatctgAGATCACCATCACTTCGAACAGAGGAGCCTCTTCTTCTAATAGCAAAAGAAGGATTTCCTGGACCGCAGATCTGCATGCTAAGTTTTTGGATGCTATGAACAAATTGGGAACCAAAAacAAAATTTATCCACTTAATATACTTGAACAAATGAATGTTCCAGGACTAACTCGACAAAATATAGCTAGCCACCTCCAGGTGAGTTATTTTCTCCATTCATCTAATCCCTATGCTATTTTAAGagaaaatCTTAGAAAGTCAGAGaatgaaaatacaaaagcaGAAGAGAATGATGTATTaactgaagatgaagagaagacAATTCAGCTGGTTGCTCGCAGTAACCCTAAACCTGTAGAAAGTATTTCTGCAGCCAAAACTACTAGTAATCGACAGATCCAACGGCTGCAGCAGCAGGCTCTGCCACCCTCACAGCATATGCCAGTTTTGCAAACGCCAATGCAAACTTCTCAGCAGCATATGGGTACGGTAGCATCTATTCAACCTTCCCATATAATCTGCCAAGGACAAACTGTGCATGATCATCAGATGAAGCAAAATCTGGATTCAGCTTCAACCTTTGACGTGTTGAATAATCCAATTGTTCAACAAGCTTTAAGCCAGCAAGATTTTGGGTATGGAGCAAATAATCCTTCTTATCTCTCCTTCCAGCAGAGTGATTCTCAAAGTTATTTTCCCAACTATCCAAATTCTTCTCCCAACTCCTTTGGCTTTGCTTCCCATTTGGTTGAAGCTGCAACTTCATCTAAACTTGGTGTTTTTTCTCAACATGCTTTAGCCACTATGCCTCCACTTCAAAATTTCCCACTATCTAGCCAATATGGAGGACAACACGCTATGGATTTTGTTCAAAGTGGAGGGGATTCAATTATTAGGAGAAATCTGATTGACTGCACAAGCAATATGCAAGTTACTGGAGCAGCTCCTTCATACATGCCGGAAAATGATGAAGCTAGATTAGAACAATTCAATCAAGAAAAGTTTTGCTCAAATGGTGATTTGCTTTGTCGGAAGAATTTCTCAGATTCTATCCTGAATGAAAGGGCTGGCTTAAATGGTAGTTTGCCTCACCCGAAAAGTTTCCCAGATTCGGAGTTGAATGAATTGATCTGGCagTTTAACGGTTGTGCAACTCCTCAGCTGCCATG 1718 0.3743 MASHSQQAQDFASSQIFPESIQVLAIDANPVCLRIHRALLEKCKYKVITIADTKEALHLLRQPENKIDLVLSHVVRHDNMDGLELMETISSSKMDVPVVLVSARDDMDYIMRGLRHGASDYLIKPVRLADIKKLWYHVFKKMTAGTPAGNPCIPKNIIIIKEEEEDMPNSKRVRCEDLKKEESEITITSNRGASSSNSKRRISWTADLHAKFLDAMNKLGTKNKIYPLNILEQMNVPGLTRQNIASHLQVSYFLHSSNPYAILRENLRKSENENTKAEENDVLTEDEEKTIQLVARSNPKPVESISAAKTTSNRQIQRLQQQALPPSQHMPVLQTPMQTSQQHMGTVASIQPSHIICQGQTVHDHQMKQNLDSASTFDVLNNPIVQQALSQQDFGYGANNPSYLSFQQSDSQSYFPNYPNSSPNSFGFASHLVEAATSSKLGVFSQHALATMPPLQNFPLSSQYGGQHAMDFVQSGGDSIIRRNLIDCTSNMQVTGAAPSYMPENDEARLEQFNQEKFCSNGDLLCRKNFSDSILNERAGLNGSLPHPKSFPDSELNELIWQFNGCATPQLP 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01230 572 Pfam Response regulator receiver domain 23 133 IPR001789 GO:0000160
Bva03g01230 572 PANTHER TWO-COMPONENT RESPONSE REGULATOR ORR23 17 447 - -
Bva03g01230 572 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 447 IPR045279 GO:0009736
Bva03g01230 572 CDD REC_typeB_ARR-like 23 139 - -
Bva03g01230 572 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 199 255 IPR006447 GO:0003677
Bva03g01230 572 Coils Coil 302 322 - -
Bva03g01230 572 SMART REC_2 21 135 IPR001789 GO:0000160
Bva03g01230 572 Coils Coil 260 280 - -
Bva03g01230 572 SUPERFAMILY Homeodomain-like 198 251 IPR009057 -
Bva03g01230 572 Gene3D - 198 253 - -
Bva03g01230 572 SUPERFAMILY CheY-like 19 141 IPR011006 -
Bva03g01230 572 Gene3D - 20 146 - -
Bva03g01230 572 ProSiteProfiles Response regulatory domain profile. 22 139 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01230 Bva-Chr3 12050013 12053466 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01230 17 249 Response Regulator Gene Family AT4G31920 40.164 8.17e-45 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bva03g01230 Response_reg 7.3e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01230 - K14491 csin:114283644 182.57