Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01229 ATGAAGAGAAACAGTGACAAAACCACTGGTTCTGCATCTTCCTCTAGGACTACCAGTCTTGAAGATTTGCAATCCAAAGTCCAAGCTAACGATGATGCATTGGCCTTCTTAAAGGCTGCGGAAACTGCGTTCCAGGATGACACAGAAAAATATTGCATGTTCCTTGACCTGCTGCTGCAATTCCATCATAAAAGGTCGCAGGTTGACGAAGTCATAGAGACCGTGAAGGAGCTATTCCAAGGACacaatgatttaatttgtggGTTTAACACCTTCTTATCCAAAGAACAAGAAATCAGTCAAGTAACCattgatgaagaaaaagattctGAAATCCATCGAGCAATGGCCTTTATAGACAATGTGAAAGAACGACTTCAAAATGAAGAACGCTATCGGACATTCCTCGACATCATGGTCGAGTTCCAAAGGGGGAATGAGGAGATTGCACTTCAAGTTTTTAATGAGGTTACTGTTCTTCTCAATGGCCATCAGGATTTGATAGAGGAGTTTACTACATTTTTTCCAGATGTACATGGCCATGAATG 548 0.3923 MKRNSDKTTGSASSSRTTSLEDLQSKVQANDDALAFLKAAETAFQDDTEKYCMFLDLLLQFHHKRSQVDEVIETVKELFQGHNDLICGFNTFLSKEQEISQVTIDEEKDSEIHRAMAFIDNVKERLQNEERYRTFLDIMVEFQRGNEEIALQVFNEVTVLLNGHQDLIEEFTTFFPDVHGHE 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01229 182 SUPERFAMILY PAH2 domain 29 96 IPR036600 GO:0006355
Bva03g01229 182 SUPERFAMILY PAH2 domain 108 177 IPR036600 GO:0006355
Bva03g01229 182 ProSiteProfiles PAH domain profile. 25 96 IPR003822 GO:0006355
Bva03g01229 182 MobiDBLite consensus disorder prediction 7 22 - -
Bva03g01229 182 Pfam Paired amphipathic helix repeat 130 175 IPR003822 GO:0006355
Bva03g01229 182 Pfam Paired amphipathic helix repeat 49 93 IPR003822 GO:0006355
Bva03g01229 182 Gene3D Paired amphipathic helix 106 178 IPR036600 GO:0006355
Bva03g01229 182 PANTHER PAIRED AMPHIPATHIC HELIX SIN3-LIKE PROTEIN-RELATED 15 177 - -
Bva03g01229 182 Coils Coil 20 40 - -
Bva03g01229 182 MobiDBLite consensus disorder prediction 1 22 - -
Bva03g01229 182 Gene3D Paired amphipathic helix 32 93 IPR036600 GO:0006355
Bva03g01229 182 PANTHER SIN3B-RELATED 15 177 IPR039774 GO:0003714
Bva03g01229 182 ProSiteProfiles PAH domain profile. 108 178 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01229 Bva-Chr3 12041567 12047191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01229 32 123 WRKY Transcription Factor Family AT4G12020 44.565 4.13e-14 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bva03g01229 PAH 9.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01229 K11644 - mus:103975938 130.183