Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01228 ATGAAGAGGACAAGGGATGAACTTTTTCCTGGCTCAGGCTCTCAATTCAAGCGACCCTTTAGTTCCTCACGTGGGGATTCCTATGGTCAAACCCAAATCCCTGGTGCTGGTGGaggtggaggaggaggagggggAGGAGGAATTGGCAGTGGCAGTGGCGGTGGTGTTGGAGCTACTTCACAGAAATTGACAACTAATGACGCATTGTCCTatttaaaagaagttaaagACATGTTTCACgaccaaagagaaaaatatgatatgttCCTTGAGGTCATGAAGGATTTCAAGGCTCAAAGGACTGACACTACTGGTGTCATAGCAAGGGTGAAGGAACTTTTTAAAGGGCataacaatttgatttttggattTAACACCTTCTTGCCAAAGGGATATGAGATAACACTCGATGAAGATGAAGCTCATCCAAAGAAAACAGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATTAAGAAACGATTCCAAAATGATGAGCATGTTTACAAATCATTCTTGGACATTTTGAATATGTACCGCAAAGAGCACAAGGACATTGGTGAGGTCTACAGTGAGGTTTCTTCCCTTTTTGAGGACCATCCTGATTTGCTCGAGGAGTTCAAGAGATTCTTACCAGATACTTCTGCAACACCTGCGCAGCATCTTCCATATGGTCGACAATCTTTACAGCGTTTCAATGAGCGTAGTTCTACAGCACCCACAATGCGGCAAATGCACGTAGACAAGCAACGCTATCGACAAAACAGGCTTATTACTTCACAAGATCGTGATCTTAGTGTTGAGCGCCTTGAGATGGATGATGACAAAGCAATTATGAAGGCACACAGAGGAGATCCAAGGAAACGTATTGAGAAGGAGAGTAAGGATAGGAGAATTCGTGATCAGGATGAGCGAGAACATGATCATGATATTAACAATAGAGATTTAAATGTGCAACGATTTCctgacaaaaagaaatgtgTTAAGAAGGCTGAAGATTTTCGGTTGACTACTGACTTTGCTTCTCATGAAGATAAAGATACCTTAAAGACCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGCTGAGCAGCTCAGATGACTACCAGGCATTCTTAAAGTGCCTTCACATTTTCAGCAATGGAATAATTAAAAGGAATGATTTACAAAATTTGGTAACTGATTTACTTGGAAAATATCCCGATCTTATGgatgaatttaatgatttcttgGAGCGTTGTGAGAATATTGATGGGTTCCTTGCTGGTGTCGTGAATAAAAAGTCATTGTCTAGTGAAGGTCACATAtccaaatcatcaaagttggaAGACAAAGATAAAGACCAGAAGCATGAAATGGATGGAgctagagagaaagaaagatacaaGGAAAAGTACATGAAATCCATTCAAGAATTAGACCTAAGTAACTGTGAACGATGTACTCCCAGCTACCGGCTTCTTCCAAAAGATTATCCAATTCTAGTGGCTAGCCAGAGATCTGAGCTTGGTGCTCAAGTATTGAACGATCATTGGGTATCTGTCACATCAGGAAGTGAGGATTACTCTTTCAAGCATATGCGCAGGAACCAGTATGAAGAGAGCCTGTTTAGGTGTGAAGATGACAGATTTGAGCTGGACATGTTACTAGAGTCTGTGAGCTCAGCTGCCAAACGTGCAGAGGAATTGTATAATAAcatcaatgaaaataagatCAATGTGGAGGTTCCATTTCATGTTGAAGAGCACTTTAGTGCTTTAAATTTAAGGTGCATTGAACGCCTATATGGTGACCACGGCCTTGATGTGATAGACATTTTACGCAAGAATCCAGCTCATGCTCTTCCTGTGATATTGACTCGcctcaaacaaaaacaagaggAGTGGAGTAGGTGTCGTACAGATTTTAACAAGGTTTGGGCTGAAATATATGCCAAAAATCACTACAAGTCACTTGATCACCGCAGCTTCTATTTTAAACAACAAGATTCAAAGAACTTGAGTACAAAATCTTTGGTGGCTGAGATCAAAGAGATTAAAGAGAAGCAGCAGAAAGAGGATGATATTCTGCAGTGCATTGCTGCTGGAAATAAACATCCCCTTTTTCCGCATCTGGAATTTGAATACCCTGATGTTGGGATTCATGAAGATCTATATAAgcttctttgcttttcttgtgATGAGCTCTTCTCAAGTAAAGAGctgtttaataaaatgatgagACTTTGGACGGGCTTCTTGGAGCCAATGCTGGGTGTTCCTTCTAGATCTcatgtaaatgaaaatatagagGAAAGGAAAACTGAAAATCATGTTCACAATTTTGTTGCATCAAATACGGGAGATGGTGATGGAATCACTACTGGTGACATGGGTATAATGAATTCTAGGCAATCAAGACACGATAACGATGAAGTTAATGATACAGTAACTGAAGTAGAGAATGTTCAGGAAACTAGTTTAGCAGCcaatgataaagaaaatggaTCTGCTGATGGTGATCACATTAGCCGAGCTGATCCTTTGATGGAAAAAAATCTTGATTATGGTGATAAAGTCTTAAATAAACAACTTGTCTCTGATGAACAAGGAGCTATCTGCAATTCATCAATTGCAGTAAGAGGGGAAAATAATCAGAGCAGAACCAGCTTAGAAATGATGTCAGGTTGCGCCCCTACTCCATCCCGATCTACTCCCACATGTGGTGATGACGACACTGTAGCCAAGACTCAGGGTATTAATGTACCCTTGGTGGAGGGCCATGATGTTACAACTCCTGCTCATTTGACCAATGGGGCGCTTGCTGAAAGCAGTAAAGTCAAAAGCCATGAAGaatctaaaattgaaaaggaggAGGGTGAGTTATCACCTAATGGTGATTTCGAGGAAGATAACTTTGTTGGCTATGGAGATGTCAGTGCGCAGTTATCACCTAAGTCAAAGCACACTattgaaagaaggaaatatcATTCCAGAAGTGGGGAGGAAGAATGCTGTCAAGAAACTGGATGTGATAATGATGCAGATGCTGACGATGAGGACAGTGAAAATGTTTCTGAAGCCGGTGAAGATGTCTCAGGTAGTGAGTCTGCTGGTGATGAATGCTCCAGGGAAGAGCATGAGGAAGAAGATATGGAACGTGATGATGTTGATGCTAAGGCTGAGAGTGAAGGTGAAGCTGAGGGGATATGTGATGGGCAATCCGTCGGAGGAGATGGCTCATCATTGCCATTGTCAGAAAGGTTCCTTTTGTCTGTGAAGCCTCTCACAAAGCGTGTATCTGCGGTTTCACatgttgaagaaagaaaggattccaggattttttatgtaaacGATGATTTCTATGTGCTTTTTAGGCTTCatcaaATTCTTTATGAGAGGATCTTAtcagccaaaaaaaattcactaagTGCTGAAACGAAATGGAGAACTGGAaaagattcttcttcttcagatCCTTATTTAAGATTTATCAATGCGCTTTACAATTTGCTTGATGGATCTTCCGACAATGCAAAGTTTGAAGATGAATGCCGAGCGATTCTCGGCAATCAGTCATATGTATTATTCACATTGGAcaagttaatttataaattggtCAGACAGCTTCAAACTGTCACAACTGATGAGATAGACGATAGGCTTCTTCAGTTGTATGAGTATGAAAGGTCAAGGAAACCTGGGAAATTGACTGATTCAGTATATCATGCAAATGCACGTGTCATCCTTCATGAAGAGAATACATATCGGATGGAATGTTCATCTGCCCCTTCCCGAATGTCCATCCAGCTAATGGACAATATGAGTGAAAAGCCTGAGGTGTATGCTGTGTCTATTGATCCAAATTTTGCCTTTTATCTGTACAATGATTTTCTGTCAGTCTTTCCCGGCAAAAAGGAACCCCAGGGCATAATACTGCAAAGAAATAAGGATAAATATGGAGGCTTAGATGAACTTTCTGCAGCATGCTCGGCCATGGAAGGTGTTCAAGTAATCAATGGATTGGAATGTAAGATAGCTTGTAATTCTTCCAAGATCTCATATGTTCTGGACACAGAAGATTTCTTCTTCcgaccaaaaaaacaaagaaaaacatctTCAGGGACTACATCTTCCCAGCATCATAGATCAAGAGAGGAAAGATTCCGCAGATTCTTATCAGGCCCACAATG 4187 0.3707 MKRTRDELFPGSGSQFKRPFSSSRGDSYGQTQIPGAGGGGGGGGGGGIGSGSGGGVGATSQKLTTNDALSYLKEVKDMFHDQREKYDMFLEVMKDFKAQRTDTTGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAHPKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKDIGEVYSEVSSLFEDHPDLLEEFKRFLPDTSATPAQHLPYGRQSLQRFNERSSTAPTMRQMHVDKQRYRQNRLITSQDRDLSVERLEMDDDKAIMKAHRGDPRKRIEKESKDRRIRDQDEREHDHDINNRDLNVQRFPDKKKCVKKAEDFRLTTDFASHEDKDTLKTMYSQAFSFCEKVKEKLSSSDDYQAFLKCLHIFSNGIIKRNDLQNLVTDLLGKYPDLMDEFNDFLERCENIDGFLAGVVNKKSLSSEGHISKSSKLEDKDKDQKHEMDGAREKERYKEKYMKSIQELDLSNCERCTPSYRLLPKDYPILVASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNINENKINVEVPFHVEEHFSALNLRCIERLYGDHGLDVIDILRKNPAHALPVILTRLKQKQEEWSRCRTDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEIKEKQQKEDDILQCIAAGNKHPLFPHLEFEYPDVGIHEDLYKLLCFSCDELFSSKELFNKMMRLWTGFLEPMLGVPSRSHVNENIEERKTENHVHNFVASNTGDGDGITTGDMGIMNSRQSRHDNDEVNDTVTEVENVQETSLAANDKENGSADGDHISRADPLMEKNLDYGDKVLNKQLVSDEQGAICNSSIAVRGENNQSRTSLEMMSGCAPTPSRSTPTCGDDDTVAKTQGINVPLVEGHDVTTPAHLTNGALAESSKVKSHEESKIEKEEGELSPNGDFEEDNFVGYGDVSAQLSPKSKHTIERRKYHSRSGEEECCQETGCDNDADADDEDSENVSEAGEDVSGSESAGDECSREEHEEEDMERDDVDAKAESEGEAEGICDGQSVGGDGSSLPLSERFLLSVKPLTKRVSAVSHVEERKDSRIFYVNDDFYVLFRLHQILYERILSAKKNSLSAETKWRTGKDSSSSDPYLRFINALYNLLDGSSDNAKFEDECRAILGNQSYVLFTLDKLIYKLVRQLQTVTTDEIDDRLLQLYEYERSRKPGKLTDSVYHANARVILHEENTYRMECSSAPSRMSIQLMDNMSEKPEVYAVSIDPNFAFYLYNDFLSVFPGKKEPQGIILQRNKDKYGGLDELSAACSAMEGVQVINGLECKIACNSSKISYVLDTEDFFFRPKKQRKTSSGTTSSQHHRSREERFRRFLSGPQ 1395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01228 1395 SUPERFAMILY PAH2 domain 59 130 IPR036600 GO:0006355
Bva03g01228 1395 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 14 1384 - -
Bva03g01228 1395 MobiDBLite consensus disorder prediction 943 960 - -
Bva03g01228 1395 PANTHER SIN3B-RELATED 14 1384 IPR039774 GO:0003714
Bva03g01228 1395 MobiDBLite consensus disorder prediction 1005 1025 - -
Bva03g01228 1395 ProSiteProfiles PAH domain profile. 145 215 IPR003822 GO:0006355
Bva03g01228 1395 MobiDBLite consensus disorder prediction 1041 1055 - -
Bva03g01228 1395 MobiDBLite consensus disorder prediction 15 30 - -
Bva03g01228 1395 MobiDBLite consensus disorder prediction 441 463 - -
Bva03g01228 1395 Pfam Sin3 family co-repressor 484 576 IPR013194 -
Bva03g01228 1395 MobiDBLite consensus disorder prediction 442 463 - -
Bva03g01228 1395 MobiDBLite consensus disorder prediction 281 314 - -
Bva03g01228 1395 MobiDBLite consensus disorder prediction 936 1077 - -
Bva03g01228 1395 Gene3D Paired amphipathic helix 348 421 IPR036600 GO:0006355
Bva03g01228 1395 MobiDBLite consensus disorder prediction 1378 1395 - -
Bva03g01228 1395 Gene3D Paired amphipathic helix 144 216 IPR036600 GO:0006355
Bva03g01228 1395 Gene3D Paired amphipathic helix 67 129 IPR036600 GO:0006355
Bva03g01228 1395 SUPERFAMILY PAH2 domain 352 419 IPR036600 GO:0006355
Bva03g01228 1395 MobiDBLite consensus disorder prediction 1366 1395 - -
Bva03g01228 1395 Pfam Paired amphipathic helix repeat 372 416 IPR003822 GO:0006355
Bva03g01228 1395 Pfam Paired amphipathic helix repeat 84 128 IPR003822 GO:0006355
Bva03g01228 1395 Pfam Paired amphipathic helix repeat 168 212 IPR003822 GO:0006355
Bva03g01228 1395 Pfam C-terminal domain of Sin3a protein 1113 1361 IPR031693 -
Bva03g01228 1395 MobiDBLite consensus disorder prediction 823 842 - -
Bva03g01228 1395 SMART hdac_interact2seq4b 482 582 IPR013194 -
Bva03g01228 1395 MobiDBLite consensus disorder prediction 1 59 - -
Bva03g01228 1395 ProSiteProfiles PAH domain profile. 61 131 IPR003822 GO:0006355
Bva03g01228 1395 SUPERFAMILY PAH2 domain 143 214 IPR036600 GO:0006355
Bva03g01228 1395 Coils Coil 555 575 - -
Bva03g01228 1395 ProSiteProfiles PAH domain profile. 350 419 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01228 Bva-Chr3 12017071 12026898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01228 49 164 WRKY Transcription Factor Family AT4G12020 48.276 4.24e-22 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bva03g01228 Sin3a_C 1.6e-55 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01228 K11644 - gmx:100807181 1982.61