Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01222 ATGTCTATGCCTTTTTCTGTTCATCAAGAATCAGACTCAAACCCACAGATCTACAGCCGAAAAGATAAATCTCTTGGATTGATTACCTCAAACTTTTTGAAGTTGTATGATTGTCATGGAATTGGGATTATTGGTCTTGATGATGCTGCTAAACAGTTAGGAGTCCAGCGTCGCCGCATGTATGATGTAGTCAACATATTAGAGAGCGTCGGAATTGTATCAAGAAAAGCCAAGAACCAATATTCATGGAAGGGTTTTAAAGCAATTCCTCAGGCTTTGGAGGAGCTTAAGGCAGAGggtatgaaagaaaaatctgatgCAACTTCTCAAAAAGTTTTGTGCAATAGAGAAAACGGTGCGTGTTCCAgccaagaaaatgataatgagGACAATCCCTTTGCCTCATCCAATATTGAATGCAGAAGAGAAAGATCGTCTTTTTCTCTAGCCCATCTCACAGAGAATTTTATAAAGCATTTACTCTGTTCAGATGTGGATTTTGTGTTGCTTGAAGAGGCTGCAAAGATAATGCCAGGCGACAGCCAAAACCCAAGTGCGTTCAGAACAAAGGTCAGACGTTTATATGATATTGCTAATGTCCTTTCTGCCATCAATCTAATTGAGAAGACTAATCACCCAGAGAACAGGAAAACAGCTTATAGGTGGTTGGGGCCTGATCATGCTATCGAGCATAATGTATCCAAGAAGAGAATGTTCGGAACTGAGATTacaaattcaagtttaaaGAGAAACAAGCCAGATTCTTTAGTGGATCAGAAGTTACAAAGTAGGAACATGCCTATGGATGTAAAAAGAGatgattttgaaaacaaagGCAATGGTAAATTCTCAGAGCAGCCACCTACGAACAGTTCAAAGGCCATAGATTTTGGTCCTTTTGCCCCTTATAATCCTAGAAGAGAAGATCCAGAGAACAAAAGGTTGAAACAGATTCTTGACTTGGAGACTTTGAGTTCTAAATATCGTCCTGAGTATTGTAATAAAGCCTTGAGTGACCTCTTTGCTCATTACATGGAAGCGTGGAAGTCGTGGTTTGACGATGCAGCTGCAAAGCAGCAGATATCTTCTTGGTTTTA 1097 0.3774 MSMPFSVHQESDSNPQIYSRKDKSLGLITSNFLKLYDCHGIGIIGLDDAAKQLGVQRRRMYDVVNILESVGIVSRKAKNQYSWKGFKAIPQALEELKAEGMKEKSDATSQKVLCNRENGACSSQENDNEDNPFASSNIECRRERSSFSLAHLTENFIKHLLCSDVDFVLLEEAAKIMPGDSQNPSAFRTKVRRLYDIANVLSAINLIEKTNHPENRKTAYRWLGPDHAIEHNVSKKRMFGTEITNSSLKRNKPDSLVDQKLQSRNMPMDVKRDDFENKGNGKFSEQPPTNSSKAIDFGPFAPYNPRREDPENKRLKQILDLETLSSKYRPEYCNKALSDLFAHYMEAWKSWFDDAAAKQQISSWF 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01222 365 Pfam E2F/DP family winged-helix DNA-binding domain 21 85 IPR003316 GO:0005667|GO:0006355
Bva03g01222 365 Pfam E2F/DP family winged-helix DNA-binding domain 148 224 IPR003316 GO:0005667|GO:0006355
Bva03g01222 365 SUPERFAMILY "Winged helix" DNA-binding domain 19 83 IPR036390 -
Bva03g01222 365 PANTHER TRANSCRIPTION FACTOR E2F 1 355 IPR015633 GO:0000978|GO:0006357
Bva03g01222 365 MobiDBLite consensus disorder prediction 264 314 - -
Bva03g01222 365 MobiDBLite consensus disorder prediction 265 280 - -
Bva03g01222 365 Gene3D - 139 225 IPR036388 -
Bva03g01222 365 Gene3D - 14 87 IPR036388 -
Bva03g01222 365 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 1 355 - -
Bva03g01222 365 SUPERFAMILY "Winged helix" DNA-binding domain 148 225 IPR036390 -
Bva03g01222 365 SMART E2F_TDP_2 144 224 IPR003316 GO:0005667|GO:0006355
Bva03g01222 365 SMART E2F_TDP_2 20 85 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01222 Bva-Chr3 11987621 11990625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01222 1 352 E2F-DP Transcription Factor Family AT3G01330 45.330 1.80e-98 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Bva03g01222 E2F_TDP 7.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01222 - K09391 vvi:100266295 353.214