Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01203 ATGGAGATTCAGGAGAGCGTGAAGGTCATGGTACACAGGCCTGTGCAGAAAAGATGGGTTTTTGATAAAGGAACTTGCCCAGAGCCCAACTCTCCCCGCCGCAAATGGAAGATTTTCCACAAATCATCTTCGGCTATCGCTGCAAAGCTGTcttcgaaacaaagaaataagcaGACGCCGGAAGAGTTTCTTTGTCCCATATCACAGTCTCTCATGGCAAATCCAGTTATTGTCTCTTCAGGCCACACCTTCGAAGGAGCCGTCGTTCAAGCTtgtaaaaatttgaactttacCCCATCTCTCTATGATGGCTCCACCCCTGATATTTCCACCGTAATCCCCAATTTAGCGCTTAAATCCGCCATTGCCAAATGGTGCCAATCCTCTTCCATTGCCCCTCCTGAGCCTCCTGATATTGACTCTGCAGAGAAGCTCGTTCGTTCTCTCATGGCAACCCAGAAGGAGACAGAGACAGAAAAGCTGAAAGTCTCAGAGAAAGAGCTAATCGAAGGGATGAAGGATAACCCACCGGTGAATTTCAATCACGCAGCCACCGCAGTCACTCGGCGACCCACCCATTTTTACTCGAGCTCAGAGGAATCGGTGGGCACCGCCGCATCAACCCCACCTCTGCAACTTTCGACACGACCAAGTTGCTATTCTTCTCCGTCGTCTTCAGAAATCGACGCCATGACTCCGAGCTCAccggaagaagaagaaatcatggCGAAATTAAGAAGCCCACAAGTGTTCGAGATCGAAGAGGCCGTGGTTTCACTGAGACTGCTCACGAGGACGAGGGAGGAGACTAGGGCCCACCTGTGCAGCCCTCGGTTACTCTCCGCCCTACGATCGGTGATTATCTCGAAATACACAAATATCCAGGTGAACGCGGTGGCAGCGGTGGTGAATCTCTCATTGGAGAAAGTGAACAAGGTGAAGATTGTTCGTTCAGGTGTTGTTCCTCCGTTGATTGATGTATTGAAGGGTGGATTCCCTGAGGCGCAGGAACACGCTTCCGGTGCACTCTTCAGTTTAGCCCTCGACGACGATAACAAAACCGCGATAGGGGTTCTGGGTGCTCTGCCACCCTTGCTCCACTTGCTCCGATCCGAGAGCGAGCGAACTCGGCACGACTCTGCCCTTGCTCTTTACCACCTCACGCTAGTTCAGAGCAACCGGGTCAAGCTGGTTAAGTTAGGGTCGGTTCCCGTTCTGCTGAGCATGGTAAAGTCGGGTCACATGACGGGTCGGGTACTGCTGATCCTCTGCAATCTGGCATCTTGTGCGGATGGGAGAGCTACAATGTTGGACGCGGGCGCGGTGGAGTGCTTGGTGGCGATTTTGAACGAGAGCGACACGTGTTCCGGGTCGACCCGGGAAAGCTGCGTGGCGGTGCTGTATGCACTGAGTCAGGGCGGGTTAAGGTTCAAGGCGACGGCAAAGGCGGCCGGGGCGGTGGAGGTGTTGCAAAAGGCGGGGAAGATTGGAAGCGAGAGGATGAAAGAGAAAGTGAAGAGGATACTGGAGATGATGAGAgggaaagaagaggaagaagaagacgTGGATTGGGAGGAGCTTCTCGACTCAGGCTTGGGGAGTCGGAGTCGGGTTTGGCACAATGCTGGGTTGGGCGAGTCAACAGCTAACTCGTCCGAATTTTG 1664 0.5084 MEIQESVKVMVHRPVQKRWVFDKGTCPEPNSPRRKWKIFHKSSSAIAAKLSSKQRNKQTPEEFLCPISQSLMANPVIVSSGHTFEGAVVQACKNLNFTPSLYDGSTPDISTVIPNLALKSAIAKWCQSSSIAPPEPPDIDSAEKLVRSLMATQKETETEKLKVSEKELIEGMKDNPPVNFNHAATAVTRRPTHFYSSSEESVGTAASTPPLQLSTRPSCYSSPSSSEIDAMTPSSPEEEEIMAKLRSPQVFEIEEAVVSLRLLTRTREETRAHLCSPRLLSALRSVIISKYTNIQVNAVAAVVNLSLEKVNKVKIVRSGVVPPLIDVLKGGFPEAQEHASGALFSLALDDDNKTAIGVLGALPPLLHLLRSESERTRHDSALALYHLTLVQSNRVKLVKLGSVPVLLSMVKSGHMTGRVLLILCNLASCADGRATMLDAGAVECLVAILNESDTCSGSTRESCVAVLYALSQGGLRFKATAKAAGAVEVLQKAGKIGSERMKEKVKRILEMMRGKEEEEEDVDWEELLDSGLGSRSRVWHNAGLGESTANSSEF 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01203 554 ProSiteProfiles U-box domain profile. 58 132 IPR003613 GO:0004842|GO:0016567
Bva03g01203 554 SMART arm_5 349 389 IPR000225 GO:0005515
Bva03g01203 554 SMART arm_5 429 472 IPR000225 GO:0005515
Bva03g01203 554 SMART arm_5 308 348 IPR000225 GO:0005515
Bva03g01203 554 SMART arm_5 267 307 IPR000225 GO:0005515
Bva03g01203 554 Gene3D - 235 511 IPR011989 -
Bva03g01203 554 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 132 IPR013083 -
Bva03g01203 554 MobiDBLite consensus disorder prediction 194 235 - -
Bva03g01203 554 Pfam U-box domain 60 129 IPR003613 GO:0004842|GO:0016567
Bva03g01203 554 Pfam Armadillo/beta-catenin-like repeat 311 347 IPR000225 GO:0005515
Bva03g01203 554 Pfam Armadillo/beta-catenin-like repeat 349 388 IPR000225 GO:0005515
Bva03g01203 554 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 319 356 IPR000225 GO:0005515
Bva03g01203 554 SMART Ubox_2 62 125 IPR003613 GO:0004842|GO:0016567
Bva03g01203 554 MobiDBLite consensus disorder prediction 194 232 - -
Bva03g01203 554 SUPERFAMILY RING/U-box 54 136 - -
Bva03g01203 554 Coils Coil 139 159 - -
Bva03g01203 554 PANTHER U BOX DOMAIN-CONTAINING 33 539 - -
Bva03g01203 554 SUPERFAMILY ARM repeat 240 509 IPR016024 -
Bva03g01203 554 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 33 539 - -
Bva03g01203 554 Coils Coil 498 518 - -
Bva03g01203 554 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 360 402 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01203 Bva-Chr3 11851243 11853477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01203 11 554 U-box Gene Family AT5G40140 54.659 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01203 - - pmum:103329916 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01203 03 11851243 11853477 Bva01g00664 01 4841066 4849814 BWGD
Bva03g01203 03 11851243 11853477 Bva03g01203 03 11851243 11853477 ECH