Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01180 ATGCAAAGGAGAGAACCCTGTAGAAATTTCCAGCGAGGAAGTTGTCAGTATGGAGAAAGGTGTAAATTTCTGCATGTACAACAACCGCGAAAATCTAATGTTCCTGGCTTTGGGGCACAGAATAGTTCACACCAGCAGCAGACTACAAATCCTTTTGGATTCGGTTCTGGTGCACACCAGCAGCAAAAGTCAAACCCTTTTGGATTTGGATCCCAGACTGCCTCACACCAGCAACAAAATGCTAACCCTTTTGGTTTCGGCGTGCAGAACAATTCCCAGTCAAAAGGGGTTCCTGATTTTGGATCTAAACAACAATTCAAACCTTTTGAAAACAAATGGACTCGTTCTTCTTCCTCAGCTCAGAGTGGTGCTTCACGTCAATCTGATAATTCCCAGTCAGGTAATCATAAATGCACAGATCCTGAGACCTGCAAACACCAAATTGCCGAAGACTATGAGCATGAGAAACCACTTTGGAAGCTCACATGCTATGGTCATAATAAATATGCTCCTTGTGACATTGTTGGTGATGTTAGCTTTGAAGAATTGCGGGCAGCAGCATACGCGGATTCTAAACAAGGAATGAGCTTGCAATCAATagttgaaagagagagaaatctATTAAATTCCAAGTTACTTGAGTTTGAGAACCTCCTTCATAAACCATACACAGTGCCAGTGAATTCTTCTCTTCTCACCAATGAGAATCCATACACGAGAACTACACAAAACAATGATCCTTTCACAATGCAACTCAACTCTTCTACTACCAATCAAAGCCACTTTCTTGGACCCAGTGCAAATCCTTTCTCAAGAGCTACCCCAACCAATGATCCTCCGTCGGTCTCAAGTTTCAGCGAATTGGGTCCTTCACTGAATATGAATTTCGGAAGCTCCTCTCTGGTGGTAAATAATGGTCCGGCGCAACCTGGTTTGTTTCAAACTCAAGCAAGCCTAAGCAACAGCAACTTATCAGTTACACAAAGTAGTTCGGCTTCAACACCAGCAGGGCTGTCAAAGTTTCCCTATTCAACTACACAACAGGCACCTGGCAACGAATCTAGCTTCAGTACAATGTTCCAATCAAAAACAGATGGTCAATTGTCAAGTAACTTGCAAGTTGAGAATGTGTCTGTAGATGCCAGTGTTTGGTTAAAACAGAAATGGAATCCTGGGGAGATTCCTGAAGCTGCCCCACCAGATGAATATGTTCGGTA 1217 0.424 MQRREPCRNFQRGSCQYGERCKFLHVQQPRKSNVPGFGAQNSSHQQQTTNPFGFGSGAHQQQKSNPFGFGSQTASHQQQNANPFGFGVQNNSQSKGVPDFGSKQQFKPFENKWTRSSSSAQSGASRQSDNSQSGNHKCTDPETCKHQIAEDYEHEKPLWKLTCYGHNKYAPCDIVGDVSFEELRAAAYADSKQGMSLQSIVERERNLLNSKLLEFENLLHKPYTVPVNSSLLTNENPYTRTTQNNDPFTMQLNSSTTNQSHFLGPSANPFSRATPTNDPPSVSSFSELGPSLNMNFGSSSLVVNNGPAQPGLFQTQASLSNSNLSVTQSSSASTPAGLSKFPYSTTQQAPGNESSFSTMFQSKTDGQLSSNLQVENVSVDASVWLKQKWNPGEIPEAAPPDEYVR 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01180 405 SMART c3hfinal6 2 27 IPR000571 GO:0046872
Bva03g01180 405 MobiDBLite consensus disorder prediction 31 140 - -
Bva03g01180 405 MobiDBLite consensus disorder prediction 326 359 - -
Bva03g01180 405 PANTHER MAKORIN-RELATED 59 403 IPR045072 -
Bva03g01180 405 MobiDBLite consensus disorder prediction 107 138 - -
Bva03g01180 405 ProSiteProfiles Zinc finger C3H1-type profile. 1 28 IPR000571 GO:0046872
Bva03g01180 405 SUPERFAMILY CCCH zinc finger 3 28 IPR036855 GO:0046872
Bva03g01180 405 Gene3D - 1 63 - -
Bva03g01180 405 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 16 1 56 - -
Bva03g01180 405 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 3 27 IPR000571 GO:0046872
Bva03g01180 405 MobiDBLite consensus disorder prediction 234 286 - -
Bva03g01180 405 MobiDBLite consensus disorder prediction 33 100 - -
Bva03g01180 405 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 16 59 403 - -
Bva03g01180 405 PANTHER MAKORIN-RELATED 1 56 IPR045072 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva03g01180 zf-CCCH 1.6e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01180 K14321 - gmx:100782777 398.282