Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01171 ATGAGTGGGACGGAGAATTCGAAGGCTGCAGTTTTGGGTGGGCTGATTGAGTGCATAAAGGAGATTTCTAGCTTACCCGAGTGCCAAAACGTTTGCAAGAGGATGTATGGAAATTTGGTTCGGAGGGTAAAGCTGCTGAGCCCTCTCTTTGAAGAAGTGAAAGATAGTGATATATCTCTAAGcgaagaagaagatagagCCTTTGAATCGCTGAGGGTTGCTTTGGATTCAGCTAAGGACCTTCTTAAGCATGTGAACAAAGGGAGTAAGCTTTATCAGGCTTTGCGAAGGAATGAGACTGCAGATAAGTTCCAACATATACATGAGAGAATTGAAGCAGCATTGAGTGATATTCCATACAACGAACTCAATCTATCGGAGGAAGTTCAAGAACAGATTCAACTTGTGCATGCTCAATTCAAAAGAGCCAACGCTAGAACAGAATTAACCGATATACAACTAGATTTGGATTTAGCAACAGCACAAACAGAAAGAGAACCTGATCCTGCAGTGCTGAGAAGACTTTCTGAAAAGTTGCATCTTAGGACTATAAATGACTTAAAGAAAGAGTCAGGTGAACTCCATGATTTGGTTATCTCTAGTGGTGGAGAACTAGGAGATCATTTTGAGATGATGTCATCCCTTCTTAAGAAGCTGAGGGACTCCATGGCCACGGAAAATCCTGAAGCTGACACCTATGAGGGTAAAAAGGTTTTTACAAAGCACAGATCTCCTGTGATCCCAGATGATTTTCGATGTCCAATATCTCTTGAACTAATGCAAGATCCCGTAATTGTCTCTACTGGACAGACCTATGAAAGATCCTGTATTCAAAAATGGCTTGATGCTGGACATAAAACCTGTCCTAAGACTCAACAGACACTTTTGCATACAGCACTGACCCCTAATTATGTTTTGAAGAGCTTGATTGCTTTATGGTGTGAAAACAATGGTGTTGAGCTACCAAAGAAGCAAGGGAGCTGTAGAACAAAGAAACCTGGAAGCAGTCCTTCAGATTGTGATCGAGAAGCTATTAGTTTTCTACTGGATAAACTAACAAATGGTAATACAGAGCATCAAAGGGCAGCTGCTGGTGAGCTTCGGCTTCTGGCTAAAAGGAATGGAGATAATAGAGTATGTATTGCTGAGGCTGGAGCAATTCCACTTCTTGTAGATCTGTTGTCTTCCCCAGACACTCGTACCCAGGAGCATGCCGTTACAGCACTTCTCAATCTTTCCATCCATGAGAATAACAAAGGAGCTATAGTGAATGCAGGAGCTATATCGGACATTGTTGATGTACTGAAAAATGGCAGCATGGAGGCAAGAGAGAATGCAGCTGCAACTCTCTTTAGTTTATCTGTTCTAGATGAGAACAAGGTTGCAATAGGGGCAGCTGGGGCTATCCCAGCTCTGATAACATTGCTCTGTGAAGGCACTCCCAGAGGTAAAAAGGATGCAGCAACTGCTATTTTCAATCTTTCAATCTATCAGGGAAACAAAGCAAGAGCTGTTAAGGCAGGTATAGTGGCTCCACTGATGGGATTTCTGAAGGACGCTGGAGGTGGAATGGTAGATGAAGCACTAGCTATACTAGCAATCCTGGCTAGCCATCATGAAGGCAAAATGGCGATAGGTCAGGCTGAGCCGATTCCTATTCTAGTTGAGGTTATACGAACCGGCTCCCCTCGCAACCGGGAGAATGCTGCTGCTGTCTTGTGGTCACTATGCACAGGTGATTTGCTGCAGCTGAGACTAGCAAAGGATTTTGGTGCAGAACAGGCATTGGAGGAATTATCAGAGAATGGCACTGATAGGGCCAAGAGAAAAGCTTCAAGTATATTAGAACTTCTACAACGAATGGAAGGGGATGTTAATTTGTA 1883 0.4291 MSGTENSKAAVLGGLIECIKEISSLPECQNVCKRMYGNLVRRVKLLSPLFEEVKDSDISLSEEEDRAFESLRVALDSAKDLLKHVNKGSKLYQALRRNETADKFQHIHERIEAALSDIPYNELNLSEEVQEQIQLVHAQFKRANARTELTDIQLDLDLATAQTEREPDPAVLRRLSEKLHLRTINDLKKESGELHDLVISSGGELGDHFEMMSSLLKKLRDSMATENPEADTYEGKKVFTKHRSPVIPDDFRCPISLELMQDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNGVELPKKQGSCRTKKPGSSPSDCDREAISFLLDKLTNGNTEHQRAAAGELRLLAKRNGDNRVCIAEAGAIPLLVDLLSSPDTRTQEHAVTALLNLSIHENNKGAIVNAGAISDIVDVLKNGSMEARENAAATLFSLSVLDENKVAIGAAGAIPALITLLCEGTPRGKKDAATAIFNLSIYQGNKARAVKAGIVAPLMGFLKDAGGGMVDEALAILAILASHHEGKMAIGQAEPIPILVEVIRTGSPRNRENAAAVLWSLCTGDLLQLRLAKDFGAEQALEELSENGTDRAKRKASSILELLQRMEGDVNL 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01171 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 385 427 IPR000225 GO:0005515
Bva03g01171 627 SUPERFAMILY ARM repeat 341 618 IPR016024 -
Bva03g01171 627 Gene3D - 425 520 IPR011989 -
Bva03g01171 627 SMART Ubox_2 250 313 IPR003613 GO:0004842|GO:0016567
Bva03g01171 627 Pfam U-box domain 247 317 IPR003613 GO:0004842|GO:0016567
Bva03g01171 627 SUPERFAMILY RING/U-box 247 322 - -
Bva03g01171 627 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 320 IPR013083 -
Bva03g01171 627 CDD RING-Ubox_PUB 251 293 IPR045210 -
Bva03g01171 627 Pfam Armadillo/beta-catenin-like repeat 457 495 IPR000225 GO:0005515
Bva03g01171 627 Pfam Armadillo/beta-catenin-like repeat 376 413 IPR000225 GO:0005515
Bva03g01171 627 Gene3D - 8 121 IPR036537 GO:0007166
Bva03g01171 627 Gene3D - 521 624 IPR011989 -
Bva03g01171 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 426 468 IPR000225 GO:0005515
Bva03g01171 627 ProSiteProfiles U-box domain profile. 246 320 IPR003613 GO:0004842|GO:0016567
Bva03g01171 627 PANTHER U BOX DOMAIN-CONTAINING 15 622 - -
Bva03g01171 627 Gene3D - 340 424 IPR011989 -
Bva03g01171 627 SMART arm_5 374 414 IPR000225 GO:0005515
Bva03g01171 627 SMART arm_5 497 537 IPR000225 GO:0005515
Bva03g01171 627 SMART arm_5 456 496 IPR000225 GO:0005515
Bva03g01171 627 SMART arm_5 415 455 IPR000225 GO:0005515
Bva03g01171 627 SMART arm_5 538 578 IPR000225 GO:0005515
Bva03g01171 627 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 15 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01171 Bva-Chr3 11484296 11487958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01171 7 623 U-box Gene Family AT3G54850 66.181 0.0 811
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01171 - - gmx:100777452 992.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01171 03 11484296 11487958 Bva03g01171 03 11484296 11487958 ECH