Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01134 ATGCCTGATTTGGCTTCTACTTTTGAAACTTCTATGGTGGACATGTCAACTATTAATTCTGCAGATAACAGTAGTGATGGTTATCTGTTTGAAGAGATATTGTCTATGGAGAATCTGAGTAATTTATGTATGGATGATGATGATCTTCCATGTCACTTCCAGACTGATTCAGGGGCATTGGCTTGTGTGGGTTGTGGAATCCTTGGTTTTCCATTAATGACTGTGGTACAACCATCTGAGAGATCATTAATGGAACTTCTACCTGCTAATCATCATCTACCTCCAGATTCCTCACCAGACCTTAATTCCTCCATGCATGGCTCTGTTTCCAGCAAAGAAGTGAAGAGGAACCAAATCCCAGCCAGCCATGATAAACCAATAAATGAGCATACTCCGAATGGAGAGGGCTTTGAAGTTCCAATAGAGCTTTCTGCTGCAGACTTGTATGATCCTGTACCGCTGGATGCTGAATTGCATGAGGATGCGCAAATTGTAGAAGGTAACAATAGGGAAATAAATCCATGTTCTCATCTTCCAGTGGAACAAAGGTGTGAATATCCTAGAAGGGAACATGCCGAAGTGTTAGATGAAGTGATTTCGGACTCTGAAAAGCAGCATCAGGACCAGAACGAGAATAAAATTGGTGAGGAACCTGCTCCTAGTTATGTTCCAAAAGGAGAACCCAAAAGTTTGTCCATCTCAAAAGTAATATGGTCCAAGaaaaaaaatggaactGAAGTTCATTTGTCGCGAGGTAAAAGGGAGGTTGGAGGCTCTGAGTTGGCCACACCAGCCCCCAGCTCAAATTctgggaaaaagagaaagcggGAAGCGGAGTGGATCACAAAGGACAGTTTCAGCAGCTATGGCTTTGCTCGAAGTCCATGTGAAGGATTGAGGCCAAGGGCAGGGAAGGTAGCCAGAGATAAAAGCACCAATGCTGTCAAGACTCTGGAGCCAAAAATGGCAAGAAAACATCCTGACGTTCTGGTTTCtcacaagaataaaaaggtTGTCAAGGGGTCTCACAAGTGTGACATTGATGGTTGTCGTATGAGTTTCAAGACCAAAGCAGAGTTGAAGTTGCACAAACGCAACCGTTGCCCACATGACGGGTGTGGAAAaAAGAAGTTCAGCTCGCACAAATATGCTATGATTCACCAGCGTGTTCATGATGATGAGAGGCCTTTCAAGTACCCTTGGGAAGGTTGCTCCATGTCATTCAAGGGGGCATGGACTAGGACAGAGCATATACGGGTTCATACCAGGGAGAAGCCATATCAGTGCAAGTTTGAGGGATGTGGCCTTTCTTTCAGGTTTGTATCAGATTATAGTCGACACAGAAGGAAAATGAGGCACTATGTTAAGTA 1370 0.4255 MPDLASTFETSMVDMSTINSADNSSDGYLFEEILSMENLSNLCMDDDDLPCHFQTDSGALACVGCGILGFPLMTVVQPSERSLMELLPANHHLPPDSSPDLNSSMHGSVSSKEVKRNQIPASHDKPINEHTPNGEGFEVPIELSAADLYDPVPLDAELHEDAQIVEGNNREINPCSHLPVEQRCEYPRREHAEVLDEVISDSEKQHQDQNENKIGEEPAPSYVPKGEPKSLSISKVIWSKKKNGTEVHLSRGKREVGGSELATPAPSSNSGKKRKREAEWITKDSFSSYGFARSPCEGLRPRAGKVARDKSTNAVKTLEPKMARKHPDVLVSHKNKKVVKGSHKCDIDGCRMSFKTKAELKLHKRNRCPHDGCGKKKFSSHKYAMIHQRVHDDERPFKYPWEGCSMSFKGAWTRTEHIRVHTREKPYQCKFEGCGLSFRFVSDYSRHRRKMRHYVK 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01134 456 MobiDBLite consensus disorder prediction 117 131 - -
Bva03g01134 456 PANTHER LYSINE-SPECIFIC DEMETHYLASE 32 89 - -
Bva03g01134 456 PANTHER LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED 128 448 - -
Bva03g01134 456 ProSiteProfiles Zinc finger C2H2 type domain profile. 343 372 IPR013087 -
Bva03g01134 456 MobiDBLite consensus disorder prediction 199 228 - -
Bva03g01134 456 MobiDBLite consensus disorder prediction 89 133 - -
Bva03g01134 456 PANTHER LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED 32 89 - -
Bva03g01134 456 SUPERFAMILY beta-beta-alpha zinc fingers 378 432 IPR036236 -
Bva03g01134 456 MobiDBLite consensus disorder prediction 199 213 - -
Bva03g01134 456 ProSiteProfiles Zinc finger C2H2 type domain profile. 399 426 IPR013087 -
Bva03g01134 456 ProSiteProfiles Zinc finger C2H2 type domain profile. 427 456 IPR013087 -
Bva03g01134 456 MobiDBLite consensus disorder prediction 244 278 - -
Bva03g01134 456 ProSitePatterns Zinc finger C2H2 type domain signature. 429 453 IPR013087 -
Bva03g01134 456 PANTHER LYSINE-SPECIFIC DEMETHYLASE 128 448 - -
Bva03g01134 456 SMART c2h2final6 366 391 IPR013087 -
Bva03g01134 456 SMART c2h2final6 343 365 IPR013087 -
Bva03g01134 456 SMART c2h2final6 427 453 IPR013087 -
Bva03g01134 456 SMART c2h2final6 397 421 IPR013087 -
Bva03g01134 456 MobiDBLite consensus disorder prediction 96 116 - -
Bva03g01134 456 Gene3D Classic Zinc Finger 364 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01134 Bva-Chr3 10744537 10748268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01134 23 86 C2H2 Transcription Factor Family AT5G04240 53.030 2.68e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva03g01134 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01134 - - gmx:100819845 306.219