Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01115 ATGGAAGTTTCTGGGGAAAACTGCAGCAATGGCAACGGTTCCTTGAAGCTTTGCAATGGCAGTGTTGGTAATAACAATGACCCACTGAACTGGAACAAGGCTGCGGATTCACTCAAAGGTAGCCACCTAGAGGAGGTGAAGCGCATGGTGGAGGAGTACCGGAAGCCGGCGGTCCGGTTAGGCGGGAAGACCCTCACCATATCTCAGGTGGCGGCGATTGCCAACCACGATGCCGGCATCACCGTGGAGCTGTCGGAGGAGGCACGGGCGGCCGTCAAGGCCAGCAGTGATTGGGTCATGGACAGCATGAACAAAGGGACTGATAGTTATGGAGTCACCACCGGCTTTGGTGCTACCTCACATAGGAGAACCAAGCAGGGAGGAGCACTCCAAAGGGAACTCATAagATTCCTGAATGCCGGCATCTTTGGCAATGGCACAGAAACCTGCCACACTCTGCCTCACTCAGCCACTAGAGCTGCTATGCTGGTTAGAATCAACACTCTCCTTCAAGGGTATTCAGGCATCAGATTTGAGATCTTGGAAGCAATCACCAAATTTCTGAACCACAACATAACCCCATGCTTGCCTCTCAGAGGCACAATCACTGCCTCAGGTGACCTCGTGCCTTTGTCTTATGTTGCTGGCCTATTGATCGGAAGACCCAACTCCAAGTCTATTGGACCTGATGGAAAAGTGCTGACTGCTACAGAGGCATTTGAACTAGCAGGAATCCATGGTGGGTTTTTCGATTTGCAACCGAAAGAAGGTTTGGCACTTGTTAATGGCACTGCAGTGGGATCTGGTTTGGCTTCCATGGTTCTTTTTGAGGCAAATATATTATCTGTTCTCTCTGAGATCTTGTCTGCAATTTTTGCTGAAGTTATGCAAGGGAAACCGGAATTTACAGACCATTTGACACATAAATTGAAGCACCACCCAGGTCAAATCGAGGCTGCAGCTATAATGGAACACATTTTGGATGGAAGCTCATATGTTAAGACTGCACAGAAACTGCATGAGATTGATCCTCTTCAGAAGCCTAAACAGGATAGATATGCTCTCAGAACATCTCCTCAGTGGCTTGGACCACATATTGAAGTTATAAGGCATGCAACAAAGATGattgagagagagataaaCTCTGTTAATGATAACCCATTGATTGATGTTTCAAGGAACAAGGCACTCCATGGTGGAAACTTCCAAGGCACCCCAATTGGTGTTTCCATGGACAACACCCGTTTGGCCATTGCTTCAATTGGGAAACTTATGTTTGCTCAATTCTCCGAGCTTGTGAACGATTTCTACAACAATGGGTTGCCTTCAAATCTGTCTGCAAGCCGAAACCCAAGCCTTGACTATGGCTTCAAAGGAGCAGAAATTGCAATGGCATCTTACTGCTCAGAACTTCAATTCCTTGCTAATCCAGTCACCAACCATGTCCAGAGTGCAGAGCAGCATAACCAGGATGTGAACTCTTTGGGTTTGATCTCCTCAAGAAAAACAGCGGAAGCTGTGGACATTTTGAAACTCATGTCATCTACTTTCTTAGTTGCATTATGCCAAGCCATTGACCTGAGGCATTTGGAGGAAAACTTGAAGAGCACAGTGAAGAATACCGTTAGCCAAGTGGCCAAGAGAGTCCTAACCATGGGTGTCAATGGAGAGTTGCATCCATCAAGGTTCTGTGAAAAGGACTTGCTCAAAGTGGTTGACCGAGAGCACGTCTTCGCCTACATTGATGATCCCTGCAGTGCAACTTACCCACTAATGCAGAAGCTGAGACATGTGCTGGTTGAACATGCATTGCAAAATGGCGAAGCCGAGAAAAACTCAAGCACTTCAATCTTCCAAAAGATTGCAGCTTTGGAGGAAGAGCTCAAGACCCTTTTGCCCAAAGAAGTAGAAAGTGCTAGGATTTCAGTTGAGAATGGAAATCCTGCCATTACAAACCAGATTAAGGAATGCAGATCTTACCCATTATACAAGTTTGTGAGGGAAGAGTTGGGGACAAGTTTGCTAACAGGTGAGAAAGTTAAGTCACCTGGTGAAGAATTTGATAGGGTATTCTCAGCAATGTGTGAAGGGAGATTGATTGATCCAATGTTGGAGTGTTTGAAGGAGTGGAATGGTGCTCCTCTACCAATCTCTTA 2156 0.461 MEVSGENCSNGNGSLKLCNGSVGNNNDPLNWNKAADSLKGSHLEEVKRMVEEYRKPAVRLGGKTLTISQVAAIANHDAGITVELSEEARAAVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQRELIRFLNAGIFGNGTETCHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPDGKVLTATEAFELAGIHGGFFDLQPKEGLALVNGTAVGSGLASMVLFEANILSVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKTAQKLHEIDPLQKPKQDRYALRTSPQWLGPHIEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLLKVVDREHVFAYIDDPCSATYPLMQKLRHVLVEHALQNGEAEKNSSTSIFQKIAALEEELKTLLPKEVESARISVENGNPAITNQIKECRSYPLYKFVREELGTSLLTGEKVKSPGEEFDRVFSAMCEGRLIDPMLECLKEWNGAPLPIS 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01115 718 Gene3D - 18 264 IPR024083 -
Bva03g01115 718 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 200 216 IPR022313 GO:0016841
Bva03g01115 718 Gene3D Fumarase/aspartase (Central domain) 265 713 - -
Bva03g01115 718 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 27 708 IPR005922 GO:0005737|GO:0006559|GO:0016841
Bva03g01115 718 PANTHER HISTIDINE AMMONIA-LYASE 23 717 IPR001106 -
Bva03g01115 718 CDD PAL-HAL 63 528 IPR001106 -
Bva03g01115 718 SUPERFAMILY L-aspartase-like 27 717 IPR008948 GO:0003824
Bva03g01115 718 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 23 717 - -
Bva03g01115 718 Pfam Aromatic amino acid lyase 65 540 IPR001106 -
Bva03g01115 718 Gene3D - 531 652 IPR023144 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01115 Bva-Chr3 10453975 10458187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01115 1 717 Monolignol Biosynthesis Gene Families AT2G37040 81.906 0.0 1245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01115 K10775 - rcu:8273543 1259.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02569 04 23003465 23006913 Bva03g01115 03 10453975 10458187 ECH
Bva13g01964 13 15817985 15821646 Bva03g01115 03 10453975 10458187 ECH
Bva03g01115 03 10453975 10458187 Bva03g01115 03 10453975 10458187 ECH