Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01105 ATGATCGGACCCAACTTCATGGACGAAATAGACTGCGGCAgcttcttcgaccaaatggacgaCCTCCTCGATTTCCCCGCTGAAGACGTTGACGCCTCCTTGCCTACCGCCGGTAACAGCAACGCTTTTCCGAGTCTTTGGCCGGTGGATACCGAGTCGTTGCCAGGCTCCGACTCTGTTTTCTCCGGGAACAGCGCGTCGGACATCTCGACGGAGCTCTATGTTCCGTACGAAGACATTGTCCAATTGGAATGGCTGTCAAATTTTGGAGAAGATTCCGTCTCTGGAGAAAGCTTGACGATGAAGAAACAGGAGGCATCAGAATCAGCATCAAAGGAGGCAGCAGCACATGAGCAATTCCAGACATCAAGCCCAGTTTCTGTGCTGGAAAGCAGCAGTTCTTGCTCTAGGGACAAGACCGCGCCTCGCAGCCCTGAAATTGTTGTCCCTGTGCCTTGTGGACGCGCGCGCAGCAAGCGCCCACGCCCTGCCACCTTCAATCCTCGCCCTGCCTCCTCTGTCGGCGAAAACACACAGCCAAATGTGGTTTCTAAGCCATTGTCTTCAGATTCTGACAATTTTGCGGACTCTCATCAtgtcaagaagaaaaagagaatcaaATTCACATTCCCATCTGAAAGTAATTACACTTTGCCATCACAAGCAGTTAGGAAATGTATGCATTGTGAGATAACCAAGACACCACAATGGAGAGCAGGACCAATGGGGCCTAAAACCCTTTGCAATGCTTGTGGTGTTCGATATAAGTCTGGCCGCCTCTTCCCCGAGTACCGCCCTGCTGCAAGCCCTACTTTTTGTCCATCCTTTCACTCCAATTCCCACAAGAAGGTGCTTGAGATGCGAACCATGGCCGGAAACAAACCTACTCTGCCCATAAATTCAGTTGATGATGATGCAGAACTCATTCCAAACACTAACACCAGCCTTACCCTGGAATACATCTG 965 0.486 MIGPNFMDEIDCGSFFDQMDDLLDFPAEDVDASLPTAGNSNAFPSLWPVDTESLPGSDSVFSGNSASDISTELYVPYEDIVQLEWLSNFGEDSVSGESLTMKKQEASESASKEAAAHEQFQTSSPVSVLESSSSCSRDKTAPRSPEIVVPVPCGRARSKRPRPATFNPRPASSVGENTQPNVVSKPLSSDSDNFADSHHVKKKKRIKFTFPSESNYTLPSQAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSFHSNSHKKVLEMRTMAGNKPTLPINSVDDDAELIPNTNTSLTLEYI 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01105 321 PANTHER GATA TRANSCRIPTION FACTOR 8 1 321 - -
Bva03g01105 321 SMART GATA_3 220 270 IPR000679 GO:0006355|GO:0043565
Bva03g01105 321 ProSitePatterns GATA-type zinc finger domain. 226 251 IPR000679 GO:0006355|GO:0043565
Bva03g01105 321 Pfam GATA zinc finger 226 259 IPR000679 GO:0006355|GO:0043565
Bva03g01105 321 ProSiteProfiles GATA-type zinc finger domain profile. 220 256 IPR000679 GO:0006355|GO:0043565
Bva03g01105 321 MobiDBLite consensus disorder prediction 97 198 - -
Bva03g01105 321 CDD ZnF_GATA 225 282 IPR000679 GO:0006355|GO:0043565
Bva03g01105 321 Gene3D - 220 270 IPR013088 GO:0006355|GO:0008270
Bva03g01105 321 MobiDBLite consensus disorder prediction 114 140 - -
Bva03g01105 321 MobiDBLite consensus disorder prediction 170 191 - -
Bva03g01105 321 PANTHER GATA TRANSCRIPTION FACTOR 1 321 - -
Bva03g01105 321 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 224 283 - -
Bva03g01105 321 PIRSF Txn_fac_GATA_plant 2 304 IPR016679 GO:0003677|GO:0005634|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01105 Bva-Chr3 10331864 10335062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01105 13 288 C2C2-Gata Transcription Factor Family AT1G08010 39.298 8.98e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bva03g01105 GATA 5.3e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01105 - - gmx:100815693 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01105 03 10331864 10335062 Bva09g00256 09 1307116 1310593 ECH
Bva03g01105 03 10331864 10335062 Bva03g01105 03 10331864 10335062 ECH