Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01101 ATGAATGTTATTGATAATTGCTGGAGATGGAACCCAGAATGGCGTAGACACCGCCCTCAACTTGCCACCTGCTCTGTGGGCTATGCAGGGAAGATGACAAATAATGTTGGCAAAGAGCTCATTCACTACAAAGTCACTGACCCAAGTGACGACCCAGTTAACCCAAAACCAGGCACCTTGAGATATGGAGCAAGCGTGATTGAAGGCAAAGTGTGGATCACATTCCAAAGAGACATGCACATTAAGCTCCATAGACCTCTTCTTATCAGCAGCTTCTCTGCCATTGATGGCCGAGGTGTCAACATTCACATTGCTCATAATGCATGCTTCATGATCTTTAAGGCAAGCAACATAATCATCCATGGCCTTCGGATCCATCATTGCAAGCCACAAGGCCCTGGAACGGTGATGGGTCCTGAGGGGAAGCTCATTCAACTGGGTCACGTTGATGGAGATGCAATTAGATTGGTCACGGCTTCAAAGATATGGATTGACCATAATACCCTTTACGATTGCCCAGATGGTCTTCTGGACGTAACCCGTGGTTCCACCAAGGTGACCGTCTCCAACAACTGGTTCAGAGAGCAGAACAAGGTTATGCTTCTTGGCCACGACGATGGATTCGTCAGGGACCAGAACATGAAGGTCACCGTTGTCTACAACTACTTTGGGCCAAATTGCGGCCAGCGCATGCCAAGGATCCGGCATGGGTATGCACACGTGGCGAACAATCTGTACCAAGGATGGATGAAATACGCCATTGGTGGAAGCATGGAACCGAGCCTGAAAAGCGAAGCCAACCTCTTCATAGCACCACAATCAGGGAGCAAGGAGGTGACATGGAGAAAAGAGAATTTAAATGATGACGTGGAGAGATGGGAATTCTATTCGTGGGAGATGTATTTGAAAATGGAGCTTCCTTCAGGGAAACAAAAAGTGTTGGTGCAAAGCCAAATTATAACATGGAACAGATGTTTAATGTTGCAGAAGCCAAAAATGTG 1001 0.4705 MNVIDNCWRWNPEWRRHRPQLATCSVGYAGKMTNNVGKELIHYKVTDPSDDPVNPKPGTLRYGASVIEGKVWITFQRDMHIKLHRPLLISSFSAIDGRGVNIHIAHNACFMIFKASNIIIHGLRIHHCKPQGPGTVMGPEGKLIQLGHVDGDAIRLVTASKIWIDHNTLYDCPDGLLDVTRGSTKVTVSNNWFREQNKVMLLGHDDGFVRDQNMKVTVVYNYFGPNCGQRMPRIRHGYAHVANNLYQGWMKYAIGGSMEPSLKSEANLFIAPQSGSKEVTWRKENLNDDVERWEFYSWEMYLKMELPSGKQKVLVQSQIITWNRCLMLQKPKM 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01101 333 SUPERFAMILY Pectin lyase-like 23 280 IPR011050 -
Bva03g01101 333 Gene3D - 1 317 IPR012334 -
Bva03g01101 333 Pfam Pectate lyase 99 269 IPR002022 -
Bva03g01101 333 PRINTS Pollen allergen Amb family signature 230 249 IPR018082 -
Bva03g01101 333 PRINTS Pollen allergen Amb family signature 86 102 IPR018082 -
Bva03g01101 333 PRINTS Pollen allergen Amb family signature 150 171 IPR018082 -
Bva03g01101 333 PRINTS Pollen allergen Amb family signature 252 271 IPR018082 -
Bva03g01101 333 PRINTS Pollen allergen Amb family signature 24 41 IPR018082 -
Bva03g01101 333 PANTHER PECTATE LYASE 1 299 - -
Bva03g01101 333 SMART amb_all 78 275 IPR002022 -
Bva03g01101 333 PANTHER PECTATE LYASE 18-RELATED 1 299 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01101 Bva-Chr3 10243744 10244912 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01101 32 308 Polysaccharide Lyase AT5G09280 64.111 1.41e-144 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01101 K01728 - gmx:100780437 544.273