Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01100 ATGAATGTTATTGATAATTGCTGGAGATGGAACCCAGAATGGCGTAGACACCGCCCTCAACTTGCCACCTGCTCTGTGGGCTATGCAGGGAAGATGACAAATAATGTTGGCAAAGAGCTCATTCATTACAAAGTCACTGACCCTAGTGACACCCCAATTAACCCAAAACCAGGCACCTTGAGATATGGAGCAAGCGTGATTGAAGGCAAAGTGTGGATCACATTCCAAAGAGACATGCACATTCAGCTCCATAGACCTCTTCTTATCAGCAACTTCACCGCTATTGATGGCCGAGGTGTCAACATTCACATTGCTCATAATGCATGCTTCGTGATCTTTAAGGCAAGCAACATAATCATCCATGGCCTTCGGATCCATCATTGCAAGCCACAAGGCCCTGGAACGGTGATGGGGCCTAAGGGGAAGCTCATTCAACTAGGTCACTTTGATGGAGATGCAATTAGATTGGACACGGCTTCAAAGATATGGATTGACCATAATACCCTTTACGATTGCCCAGACGGTCTTCTAGACGTAACCCGTGGTTCCACCAATGTGACCGTCTCCAACAACTGGTTCAGAGAGCAGAACAAGGTTATGCTTCTTGGCCACGACGATGGATTCGTCAGGGACCAGAACATGAAGGTCACCGTTGTCTACAACTACTTTGGGCCAAATTGCGGCCAGCGCATGCCAAGgaTCCGGCATGGGTATGCACACGTGGCAAACCATCTATTTCGGGGATGGATGAAATACGCCATTGGTGGAAGCATGGAACCGAGCCTGAAAAGCAAAGCCAACCTGTTCATAGCACCACAATCAGGGAGCAAGGAGGTGACATGGAGAAAAGAGAATTTCAATGACGACGTGGAGGAATGGGAATTCTATTCTGTGGGTGACGTATTTGAAAATGGAGCTTCCTTTAGGGAAACAAAAAGTGTTGGTGCAAAACCAAATTATAACATGGAACAGATGCTTAAAGTTGCAGAAGCCAAAAATGTGAGGCAATTGACAAGGTCAGCAGGTGCATTACAATGTAGTAAAACCTCAAGATGCTG 1058 0.4641 MNVIDNCWRWNPEWRRHRPQLATCSVGYAGKMTNNVGKELIHYKVTDPSDTPINPKPGTLRYGASVIEGKVWITFQRDMHIQLHRPLLISNFTAIDGRGVNIHIAHNACFVIFKASNIIIHGLRIHHCKPQGPGTVMGPKGKLIQLGHFDGDAIRLDTASKIWIDHNTLYDCPDGLLDVTRGSTNVTVSNNWFREQNKVMLLGHDDGFVRDQNMKVTVVYNYFGPNCGQRMPRIRHGYAHVANHLFRGWMKYAIGGSMEPSLKSKANLFIAPQSGSKEVTWRKENFNDDVEEWEFYSVGDVFENGASFRETKSVGAKPNYNMEQMLKVAEAKNVRQLTRSAGALQCSKTSRC 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01100 352 PANTHER PECTATE LYASE 1 349 - -
Bva03g01100 352 PANTHER PECTATE LYASE 18-RELATED 1 349 IPR045032 GO:0030570
Bva03g01100 352 SMART amb_all 78 275 IPR002022 -
Bva03g01100 352 SUPERFAMILY Pectin lyase-like 23 349 IPR011050 -
Bva03g01100 352 Pfam Pectate lyase 97 269 IPR002022 -
Bva03g01100 352 Gene3D - 1 345 IPR012334 -
Bva03g01100 352 PRINTS Pollen allergen Amb family signature 252 271 IPR018082 -
Bva03g01100 352 PRINTS Pollen allergen Amb family signature 86 102 IPR018082 -
Bva03g01100 352 PRINTS Pollen allergen Amb family signature 230 249 IPR018082 -
Bva03g01100 352 PRINTS Pollen allergen Amb family signature 24 41 IPR018082 -
Bva03g01100 352 PRINTS Pollen allergen Amb family signature 150 171 IPR018082 -
Bva03g01100 352 PRINTS Pollen allergen Amb family signature 323 346 IPR018082 -
Bva03g01100 352 PRINTS Pollen allergen Amb family signature 293 317 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01100 Bva-Chr3 10222766 10224751 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01100 32 279 Polysaccharide Lyase AT5G09280 69.355 4.17e-139 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01100 K01728 - gmx:100780437 585.104