Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01099 ATGTCTTCTCAAGGCATGAATGGCATCCTATATCGCTCTGTTTTGTTGCTTGTAATCACGGTCACCCTTTTCGCTCCAAATCTCAGTGCCTTCACCATGAATGTTATTGATAATTGCTGGAGATGGAACCCAGAGTGGCGAAGACACCGCCCTCAACTTGCCACCTGCTCTGTGGGCTATGCAGGGAAgatgacaaataattttggCAAAGAGCTCATCCACTACAAAGTCACTGACCATAGTGACGACCCAATTAACCCAAAACCAGGCACCTTGAGATACGGAGCAAGCGTGATTCAAGGCAAGGTGTGGATCACATTCCAAAGAGACATGCACATTAAGCTCCATAGACCTCTTCTTATCAGCAGCTTTACATCCATTGATGGCCGAGGTGTCAACATTCACATTGCTCATAATGCATGCTTCATGATCTTTAAGGCAAGCAACATAATCATCCATGGCCTTCGGATCCATCATTGCAAGCCACAAGGCCCTGGAACGGTGATGGGTCCTGAGGGGAAGCTCATTCAACTGGGTCACGTTGATGGAGATGCAATTAGATTGGTCACGGCTTCAAAGATATGGATTGACCATAATACCCTTTACGATTGCCCAGATGGTCTTCTGGACGTAACCCGTGGTTCCACCAATGTGACCGTCTCCAACAACTGGTTCAGAGAGCAGAACAAGGTTATGCTTCTTGGCCACGACGATGGATTCGTCAGGGACCAGAAAATGAAGGTCACCGTTGTCTACAACTACTTTGGGCCAAATTGCGGCCAGCGCATGCCAAGAATCCGGCATGGGTATGCACACGTGGCGAACAATCTGTACCAAGGATGGATGAAATACGCCATTGGTGGAAGCATGGAACCGAGCCTGAAAAGCGAAGCCAACCTCTTCATAGCACCACAATCAGGGAGCAAGGAGGTGACATGGAGAAAAGAGAATTTAAATGATGACTTGGAGAAATGGGAATTCTATTCTGTGGGAGATGTATTTGAAAATGGAGCTTCCTTCAGGGAAACAAAAAGTGTTGGTGCAAAGCCAAATTATAACATGGAACAGATGTTTAAAGTTGCAGAAGCCAAAAATGTGAGGCAATTGTCAAGGTCAGCAGGTGCATTACGATGCAGTAAAACCTCAAGATGCTG 1154 0.4593 MSSQGMNGILYRSVLLLVITVTLFAPNLSAFTMNVIDNCWRWNPEWRRHRPQLATCSVGYAGKMTNNFGKELIHYKVTDHSDDPINPKPGTLRYGASVIQGKVWITFQRDMHIKLHRPLLISSFTSIDGRGVNIHIAHNACFMIFKASNIIIHGLRIHHCKPQGPGTVMGPEGKLIQLGHVDGDAIRLVTASKIWIDHNTLYDCPDGLLDVTRGSTNVTVSNNWFREQNKVMLLGHDDGFVRDQKMKVTVVYNYFGPNCGQRMPRIRHGYAHVANNLYQGWMKYAIGGSMEPSLKSEANLFIAPQSGSKEVTWRKENLNDDLEKWEFYSVGDVFENGASFRETKSVGAKPNYNMEQMFKVAEAKNVRQLSRSAGALRCSKTSRC 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01099 384 Gene3D - 33 377 IPR012334 -
Bva03g01099 384 SUPERFAMILY Pectin lyase-like 55 381 IPR011050 -
Bva03g01099 384 PANTHER PECTATE LYASE 18-RELATED 28 381 IPR045032 GO:0030570
Bva03g01099 384 PANTHER PECTATE LYASE 28 381 - -
Bva03g01099 384 PRINTS Pollen allergen Amb family signature 355 378 IPR018082 -
Bva03g01099 384 PRINTS Pollen allergen Amb family signature 81 106 IPR018082 -
Bva03g01099 384 PRINTS Pollen allergen Amb family signature 118 134 IPR018082 -
Bva03g01099 384 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Bva03g01099 384 PRINTS Pollen allergen Amb family signature 182 203 IPR018082 -
Bva03g01099 384 PRINTS Pollen allergen Amb family signature 262 281 IPR018082 -
Bva03g01099 384 PRINTS Pollen allergen Amb family signature 325 349 IPR018082 -
Bva03g01099 384 SMART amb_all 110 307 IPR002022 -
Bva03g01099 384 Pfam Pectate lyase 127 301 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01099 Bva-Chr3 10203415 10204746 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01099 64 311 Polysaccharide Lyase AT5G09280 71.774 7.05e-143 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01099 K01728 - gmx:100780437 615.535