Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01083 ATGGCTAAGGACGTTGAGGTTGCCGAGCGTGGGTCCTTCTCCGCCAAGGACTACCACGACCCACCTCCGACGCCTCTCATTGATGCGGAGGAGCTCACGAAGTGGTCCTTTTACAGAGCTTTGATAGCTGAGTTTATTGCCACTTTGCTCTTCCTCTACATTACTGTGCTCACTGTAATTGGGTACAAAAGCCAGTCTGATCCCAACCTAAATCATGATGCTTGTGCTGGGGTTGGTATTCTTGGAATTGCGTGGGCTTTTGGTGGCATGATCTTCATACTCGTTTACTGCACTGCTGGAATTTCTGGAGGCCACATTAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGGTGTCTCTGATCCGAGCCATCATGTACATGGTGGCTCAGTGCTTGGGGGCAATCTGTGGAGTCGGGTTGGTCAAGGCCTTCCAACAATCTTACTACAAAAGGTATGGCGGCGGTGCCAATACGCTTGCTGATGGCTACAGCACCGGCGTTGGATTGGGTGCTGAGATCATTGGAACCTTTGTTTTGGTATACACAGTCTTCTCTGCTACCGATCCCAAGAGGAATGCTAGAGATTCACATGTCCCAGTTTTGGCTCCACTTCCAATTGGGTTTGCTGTGTTCATGGTTCACTTGGCCACCATCCCAGTCACCGGCACCGGCATTAACCCGGCTAGGAGTCTCGGAGCTGCTGTCATCTACAACCAAGACGAAGCCTGGAATGATCATTGGATCTTTTGGGTAGGGCCATTCATTGGGGCAGCCATTGCAGCTTTCTACCACCAATTCATCTTGAGGGCAGGTGCAGCTAAGGCTCTTGGGTCATTCAGGAGCAACCCCACTGTTTG 863 0.5122 MAKDVEVAERGSFSAKDYHDPPPTPLIDAEELTKWSFYRALIAEFIATLLFLYITVLTVIGYKSQSDPNLNHDACAGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYMVAQCLGAICGVGLVKAFQQSYYKRYGGGANTLADGYSTGVGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNQDEAWNDHWIFWVGPFIGAAIAAFYHQFILRAGAAKALGSFRSNPTV 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01083 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva03g01083 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva03g01083 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva03g01083 287 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva03g01083 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva03g01083 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva03g01083 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Bva03g01083 287 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
Bva03g01083 287 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva03g01083 287 TIGRFAM MIP: MIP family channel proteins 43 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva03g01083 287 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva03g01083 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 284 IPR034294 -
Bva03g01083 287 Gene3D Glycerol uptake facilitator protein. 24 287 IPR023271 -
Bva03g01083 287 PANTHER AQUAPORIN PIP2-4-RELATED 1 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01083 Bva-Chr3 9962285 9965771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01083 1 287 Major Intrinsic Protein MIP AT3G54820 82.578 3.05e-179 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01083 K09872 - gmx:100815583 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01083 03 9962285 9965771 Bva09g00246 09 1245376 1247055 ECH
Bva04g02581 04 23076548 23078042 Bva03g01083 03 9962285 9965771 ECH
Bva13g01951 13 15735063 15736495 Bva03g01083 03 9962285 9965771 ECH
Bva03g01083 03 9962285 9965771 Bva03g01083 03 9962285 9965771 ECH