Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01068 ATGACGGACGGTCATCTCTTCAACAACATTACCCTTGGAGGCCGTGGAGGAACTAATCCAGGGCAGATGAAAATGTATTCAGGGGGGGTCTTATGGAAGAGACAGGGTGGTGGTAAGGCTATTGAAGTTGATAAAGCTGACATCATGGGAGTGACGTGGATGAAGGTCCCAAGAACTAATCAGCTGGGTGTTCGGATCAAAGATGGCTTGTACTATAAGTTCACTGGGTTCCGTGATCAGGATCTTGCAACTTTGACTaccttttttcaaaatacttgTGGCATAACACCAGAGGAAAAACAACTTTCTGTTAGTGGGCGTAACTGGGGGGAGATTGATCTAAATGGAAATATGCTGACTTTCTCAGTTGGTTCAAAGCAAGCTTTTGAGGTGTCTTTGGCGGATGTCTCTCAAACACAGCTTCAAGGGAAAAATGATGTTATTTTGGAGTTTCATGTGGATGACACAACTGGAGCTAATGAGAAAGATTCATTAATGGAGATAAGTTTTCATATACCGAATTCCAACACCCAGTTTGTTGGTGATGAGAATCATCCACCTGCTCAGGTTTTCCGTGACAAGATCATGTCTATGGCAGATGTTGGTCCTGGTGGTGAAGATGCTGTCGTTACATTTGATGGTATCGCTATCCTTACACCGAGAGGTCGTTACAGTGTTGAGCTACATCTGTCATTCTTGCGGCTTCAAGGACAGGCTAATGATTTCAAAATTCAGTACAGTAGTGTAGTTCGTCTATTTTTACTCCCCAAGTCTAATCAGCCACATACCTTTGTTGTTATTAGTCTCGATCCGCCTATTCGTAAAGGGCAAACTCTGTACCCACATATTGTGATGCAGTTTGAAACTGATTATGTCGTACAAAGCACCTTGTCATTAAGTGAAGATCTTTACAACTCTAAATACAAGGACAAGTTGGAGCCATCTTATAAGGGACTCATCCATGATGTGTTCACCACAATATTGCGTGGCCTGTCTGGTGCCAAAGTTACCAAACCAGGTAAATTTAGAAGCTGTCAAGATGGTTATGCGGTTAAGTCATCTTTGAAAGCTGAAGATGGAATTCTGTATCCCCTTGAGAAGAGCTTCTTCTTTCTACCTAAGCCTCCTACTCTCATTCTTCATGAAGAGATTGATTATGTGGAATTTGAGAGGCATGCTGCTGGTGGTTCAAATATGCATTATTTTGACCTTCTCATCAGACTGAAAACTGAACAGGAGCATCTCTTCCGTAATATTCAGAGGAATGAATACCATAATTTGTTTGACTTTATCAGTGCAAAGGGCTTGAAGATTATGAACTTAGGAGGTGTCCAGACCACTGATGGTGTGGCTGCTGTTCTTCGGGATGATGTTGATGATGCTGTTGATCCACATCTTGAGCGCATTAGGAATGAAGCTGGAGGAGAGGAGAGTGATGAAGAGGATTCAGATTTTGTTGCTGACGAGGATGATGGTGGTTCTCCAACTGATGACTCTGGAGAAGATGATTCCGATGGCAGTGGAAGTGATGATGAGAAAGAGAAGCCATCCAAAAAGGAATCAAAGAAGGATCCATCTTCTAAGCCATCTACTTCTAAGAGGAAATCTAAAGATGGAGATGAagatgggaaaaagaaaaagcaaaagaagaaaaaggaccCAAATGCACCAAAGAGGGCATTGTCTGGTTTCATGTTCTTCTCACAAATGGAAAGAGAGAATGTAAAGAAAACTAATCCTGGAATTTCATTCACGGAGGTGGGAAAAGTACTCGGggagaaatggaaaaagatgTCAGCGGAGGAGAAGGAACCTCATGAAGCCAAAGCTCGCGCAGATAAGAAACGATATAAGGATGAGATTAGTGGCTATAAGAATCCACAACCGACGAATGTAGATTCAGGAAATGAATCAGACAGTGCCTA 1925 0.4088 MTDGHLFNNITLGGRGGTNPGQMKMYSGGVLWKRQGGGKAIEVDKADIMGVTWMKVPRTNQLGVRIKDGLYYKFTGFRDQDLATLTTFFQNTCGITPEEKQLSVSGRNWGEIDLNGNMLTFSVGSKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGPGGEDAVVTFDGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTLYPHIVMQFETDYVVQSTLSLSEDLYNSKYKDKLEPSYKGLIHDVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISAKGLKIMNLGGVQTTDGVAAVLRDDVDDAVDPHLERIRNEAGGEESDEEDSDFVADEDDGGSPTDDSGEDDSDGSGSDDEKEKPSKKESKKDPSSKPSTSKRKSKDGDEDGKKKKQKKKKDPNAPKRALSGFMFFSQMERENVKKTNPGISFTEVGKVLGEKWKKMSAEEKEPHEAKARADKKRYKDEISGYKNPQPTNVDSGNESDSA 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01068 641 Gene3D High mobility group box domain 540 637 IPR036910 -
Bva03g01068 641 Gene3D - 199 338 - -
Bva03g01068 641 Gene3D - 96 179 IPR038167 -
Bva03g01068 641 Pfam HMG (high mobility group) box 557 625 IPR009071 -
Bva03g01068 641 Gene3D - 1 92 IPR011993 -
Bva03g01068 641 SUPERFAMILY HMG-box 548 629 IPR036910 -
Bva03g01068 641 MobiDBLite consensus disorder prediction 509 548 - -
Bva03g01068 641 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 639 - -
Bva03g01068 641 Pfam Histone chaperone Rttp106-like 350 439 IPR013719 -
Bva03g01068 641 SMART Rtt106_2 348 441 IPR013719 -
Bva03g01068 641 MobiDBLite consensus disorder prediction 597 622 - -
Bva03g01068 641 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 557 625 IPR009071 -
Bva03g01068 641 CDD PH2_SSRP1-like 342 441 - -
Bva03g01068 641 SUPERFAMILY PH domain-like 206 440 - -
Bva03g01068 641 CDD PH1_SSRP1-like 207 340 - -
Bva03g01068 641 CDD HMGB-UBF_HMG-box 557 622 - -
Bva03g01068 641 MobiDBLite consensus disorder prediction 597 641 - -
Bva03g01068 641 SMART hmgende2 556 626 IPR009071 -
Bva03g01068 641 PRINTS Structure-specific recognition protein signature 219 235 IPR000969 GO:0003677|GO:0005634
Bva03g01068 641 PRINTS Structure-specific recognition protein signature 416 434 IPR000969 GO:0003677|GO:0005634
Bva03g01068 641 PRINTS Structure-specific recognition protein signature 264 280 IPR000969 GO:0003677|GO:0005634
Bva03g01068 641 PRINTS Structure-specific recognition protein signature 356 374 IPR000969 GO:0003677|GO:0005634
Bva03g01068 641 PRINTS Structure-specific recognition protein signature 400 416 IPR000969 GO:0003677|GO:0005634
Bva03g01068 641 PRINTS Structure-specific recognition protein signature 374 391 IPR000969 GO:0003677|GO:0005634
Bva03g01068 641 PRINTS Structure-specific recognition protein signature 241 257 IPR000969 GO:0003677|GO:0005634
Bva03g01068 641 PRINTS Structure-specific recognition protein signature 329 342 IPR000969 GO:0003677|GO:0005634
Bva03g01068 641 MobiDBLite consensus disorder prediction 476 508 - -
Bva03g01068 641 Gene3D - 339 447 IPR011993 -
Bva03g01068 641 Pfam Structure-specific recognition protein (SSRP1) 106 174 IPR024954 -
Bva03g01068 641 MobiDBLite consensus disorder prediction 468 565 - -
Bva03g01068 641 PANTHER FACT COMPLEX SUBUNIT SSRP1-B 1 639 - -
Bva03g01068 641 MobiDBLite consensus disorder prediction 624 641 - -
Bva03g01068 641 Pfam POB3-like N-terminal PH domain 7 98 IPR035417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01068 Bva-Chr3 9548277 9554665 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01068 553 625 ARID Transcription Factor Family AT1G04880 34.247 2.73e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Bva03g01068 POB3_N 1.8e-21 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01068 K09272 - zju:107415606 1046.19