Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01052 ATGGTTTCCCTCTTCCAACCTAGTCGATCACCTGCCGCATCTGAGATATTTGTCGCCTCCATCCATACCCCGGGACTTTGTGCTGATCACAATGTCAAGTTGATAACTGTGGCTAAAGCTAAAACTCTTGGTGAATGGGCTGGGTTGTGCAAGATTGATTCTGAGGGAAAAGCAAGGAAAGTAATCGGTTGCTATTGTGCTTTTGTCAAGaaCTATAAGTTGATCACACAACACTGGTTTTTGCAAGACTTCGGAGAGGAGTCACCAGCATTAGATGTTCGGCAATATATTAAGGCCCAATA 302 0.4404 MVSLFQPSRSPAASEIFVASIHTPGLCADHNVKLITVAKAKTLGEWAGLCKIDSEGKARKVIGCYCAFVKNYKLITQHWFLQDFGEESPALDVRQYIKAQ 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01052 100 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 21 68 IPR004038 -
Bva03g01052 100 Gene3D - 13 83 IPR029064 -
Bva03g01052 100 PRINTS Ribosomal protein S12E family signature 59 72 IPR000530 GO:0003735|GO:0005840|GO:0006412
Bva03g01052 100 PRINTS Ribosomal protein S12E family signature 34 55 IPR000530 GO:0003735|GO:0005840|GO:0006412
Bva03g01052 100 SUPERFAMILY L30e-like 21 72 IPR029064 -
Bva03g01052 100 PANTHER 40S RIBOSOMAL PROTEIN S12 25 73 IPR000530 GO:0003735|GO:0005840|GO:0006412
Bva03g01052 100 PANTHER 40S RIBOSOMAL PROTEIN S12 25 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01052 Bva-Chr3 9177127 9179034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01052 26 100 Cytoplasmic Ribosomal Protein Gene Family AT1G15930 59.211 9.44e-24 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01052 K02951 - twl:119981686 93.2041