Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00962 ATGACAACAGCAGCAGAAGACTCTTTAAAGATAGAGATGATTCGCAACCATCTCTTAGAACAGAGTCTCTCTTTTGCCGGATCCTCCTATTTCGAAGCAGATATCGAAATCGTTGATCTCAGTTCCCCGAAAGTTCTGAAATCCATGGAAAAGAGTTCGTCGGAGGAAACCCAGAAGCCAGATTCCGGCGAATCGGCGGTTTCCGAGCAGAGGAGCTCGGAATATGACGAGGGGAGGCGTTACAGAGGAGTCCGGCGACGGCCGTGGGGCAAGTTCGCGGCGGAGATCCGCGACCCGGCCCGGAAAGGGACCCGAGTATGGCTAGGTACATTTGATAGTGAAATTGATGCCGCAAAGGCTTATGATTGTGCTGCGTTTAGGATGAGAGGACAAAAGGCAATTCTGAATTTTCCTCTAGATGCCGGAGGATCCAATCCGAAGCCGATCTGCAGTGGCcggaaaaggagaagagagagcAGAGAGGAACAACCACAAGTTGCCAATGGTATTAGGTCATA 518 0.4865 MTTAAEDSLKIEMIRNHLLEQSLSFAGSSYFEADIEIVDLSSPKVLKSMEKSSSEETQKPDSGESAVSEQRSSEYDEGRRYRGVRRRPWGKFAAEIRDPARKGTRVWLGTFDSEIDAAKAYDCAAFRMRGQKAILNFPLDAGGSNPKPICSGRKRRRESREEQPQVANGIRS 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00962 172 Coils Coil 167 172 - -
Bva03g00962 172 SMART rav1_2 80 144 IPR001471 GO:0003700|GO:0006355
Bva03g00962 172 PANTHER DNA-BINDING DOMAIN 49 158 IPR044808 GO:0003700|GO:0009873
Bva03g00962 172 Pfam AP2 domain 80 130 IPR001471 GO:0003700|GO:0006355
Bva03g00962 172 PRINTS Ethylene responsive element binding protein signature 81 92 IPR001471 GO:0003700|GO:0006355
Bva03g00962 172 PRINTS Ethylene responsive element binding protein signature 120 140 IPR001471 GO:0003700|GO:0006355
Bva03g00962 172 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 49 158 - -
Bva03g00962 172 MobiDBLite consensus disorder prediction 46 80 - -
Bva03g00962 172 ProSiteProfiles AP2/ERF domain profile. 80 138 IPR001471 GO:0003700|GO:0006355
Bva03g00962 172 Gene3D AP2/ERF domain 79 140 IPR036955 GO:0003700|GO:0006355
Bva03g00962 172 MobiDBLite consensus disorder prediction 138 172 - -
Bva03g00962 172 CDD AP2 88 138 IPR001471 GO:0003700|GO:0006355
Bva03g00962 172 SUPERFAMILY DNA-binding domain 80 139 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00962 Bva-Chr3 6764937 6765940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00962 6 165 AP2-EREBP Transcription Factor Family AT5G07580 43.523 7.38e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva03g00962 AP2 5.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00962 - - ccaj:109813158 169.088