Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00950 ATGGGGAATACTTGTGTTGGTCCGAGCATTTCCAAAAATGGTTTTCTCCAATCAGTTTCTGCCGCAATGTGGCGGACCAGATCTCCTGATGGATCTGTTTCTCATGGAGAGGCTGCAAATGAGGAAACACCTAAAGAACCTGAATCTTCCTTGCCTGTCCAAAACAAACCTCCTGAACAAATGACTATGCCAAGACAAGAACCCAAAGCAGAAATCAGACCAGAACAGGAGGCGAAACCCAAGAGACATCCTTCTATGAAGAGGGTGCCTAGTGCAGGACTTCGTGTTGACTCTGTATTACAAACAAAAACTGGAAATTTTAAGGAATTCTTTAGTTTGGGGAGAAAACTTGGACAGGGTCAGTTTGGAACGACATTTCTATGTGTTGAGAAGGCAACAGGTAAAGAGTATGCCTGTAAATCTATTGCAAAGAGGAAGCTGGTAACTGAAGAGGATGTTGAGGATGTGAGAAGAGAAATTCAGATAATGCACCACCTGGCAGGGCATCCAAATGTTATATCCATCAAAGGTGCTTATGAGGATGCTGTGGCAGTCCATGTTGTGATGGAGTTATGTGCAGGAGGGGAGCTTTTTGATAGGATTATCCAGCGTGGGCATTATACTGAAAGAAAGGCAGCTGACCTCATTAGGACTATAGTTGGGGTTGTGGAAGCTTGTCATTCTCTTGGTGTGATGCACAGAGACCTTAAACCTGagaattttctctttgtcAATCAGCAGGAGGACTCTCTTATGAAAACCATTGACTTTGGATTATCTGTATTCTTTAAGCCAGGTGAAATATTTACTGATGTGGTTGGAAGCCCATATTATGTTGCCCCAGAAGTTTTGCGAAAGCGTTATGGTCCCGAAGCAGATGTTTGGAGCGCTGGGGTGATTCTTTACATTCTTTTGAGTGGAGTCCCTCCATTTTGGGCTGAAAACGAGCAAGGGATATTTGAACAGGTTTTGCATGGTGATCTTGACTTCTCATCTGATCCCTGGCCTAGCATTTCTGAAAGTGCTAAAGATTTAGTAAGGAAAATGCTTGTCCGTGACCCTAGAAGGCGGCTCAATGCACATCAagttttatGTCATCCTTGGATTCAAGTTGATGGTGTAGCACCTGACAAGGCACTTGATTCTGCAGTTTTGAGCCGCTTGAAGCAATTCTCTGCTATGAACAAGCTCAAGAAAATGGCTCTTAGAGTAATTGCAGAGAGCTTATCTGAAGAAGAAATAGCTGGCCTGAAAGAAATGTTCAAGATGATAGATGCAGACAACAGTGGTCAAATCACTTTTGAAGAACTTAAAGCTGGTTTGAAAAGAGTGGGTGCTAATCTTAAGGAGTCTGAAATTTATGATTTGATGCAAGCAGCTGATGTAGATAACAGTGGAACAATTGATTATGGGGAGTTCATTGCTGCGATGCTGCATTTAAACAAGATCGAAAGAGAAGACCATCTATTTGCAGCCTTTTCTTACTTTGACAAGGATGGAAGTGGCTATATCACTCAAGATGAACTTCAACAAGCCTGTGAGGAGTTTGGCATAGAAGATGTCCGCTTGGAAGAGATGATCAAAGAAATTGATCAAGACAATGATGGACGCATAGATTATAATGAGTTTGTGAGCATGATGCAGAAGGGCAATGTACCTGGGATTGCCAGGAAAGGCCTAGAACATAGTTTCAGCATAAATTTCAGAGAGGCATTGAAACTTTA 1724 0.4188 MGNTCVGPSISKNGFLQSVSAAMWRTRSPDGSVSHGEAANEETPKEPESSLPVQNKPPEQMTMPRQEPKAEIRPEQEAKPKRHPSMKRVPSAGLRVDSVLQTKTGNFKEFFSLGRKLGQGQFGTTFLCVEKATGKEYACKSIAKRKLVTEEDVEDVRREIQIMHHLAGHPNVISIKGAYEDAVAVHVVMELCAGGELFDRIIQRGHYTERKAADLIRTIVGVVEACHSLGVMHRDLKPENFLFVNQQEDSLMKTIDFGLSVFFKPGEIFTDVVGSPYYVAPEVLRKRYGPEADVWSAGVILYILLSGVPPFWAENEQGIFEQVLHGDLDFSSDPWPSISESAKDLVRKMLVRDPRRRLNAHQVLCHPWIQVDGVAPDKALDSAVLSRLKQFSAMNKLKKMALRVIAESLSEEEIAGLKEMFKMIDADNSGQITFEELKAGLKRVGANLKESEIYDLMQAADVDNSGTIDYGEFIAAMLHLNKIEREDHLFAAFSYFDKDGSGYITQDELQQACEEFGIEDVRLEEMIKEIDQDNDGRIDYNEFVSMMQKGNVPGIARKGLEHSFSINFREALKL 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00950 574 ProSiteProfiles EF-hand calcium-binding domain profile. 484 519 IPR002048 GO:0005509
Bva03g00950 574 Pfam Protein kinase domain 112 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva03g00950 574 ProSiteProfiles EF-hand calcium-binding domain profile. 522 553 IPR002048 GO:0005509
Bva03g00950 574 ProSitePatterns EF-hand calcium-binding domain. 461 473 IPR018247 -
Bva03g00950 574 CDD EFh 488 548 IPR002048 GO:0005509
Bva03g00950 574 MobiDBLite consensus disorder prediction 66 84 - -
Bva03g00950 574 ProSitePatterns Protein kinases ATP-binding region signature. 117 144 IPR017441 GO:0005524
Bva03g00950 574 PANTHER SERINE/THREONINE-PROTEIN KINASE 60 558 - -
Bva03g00950 574 SUPERFAMILY EF-hand 398 549 IPR011992 -
Bva03g00950 574 CDD EFh 417 477 IPR002048 GO:0005509
Bva03g00950 574 ProSiteProfiles EF-hand calcium-binding domain profile. 448 483 IPR002048 GO:0005509
Bva03g00950 574 Gene3D - 394 554 - -
Bva03g00950 574 SMART serkin_6 111 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva03g00950 574 Gene3D Transferase(Phosphotransferase) domain 1 197 393 - -
Bva03g00950 574 Gene3D Phosphorylase Kinase; domain 1 113 196 - -
Bva03g00950 574 ProSitePatterns EF-hand calcium-binding domain. 497 509 IPR018247 -
Bva03g00950 574 MobiDBLite consensus disorder prediction 47 61 - -
Bva03g00950 574 CDD STKc_CAMK 110 368 - -
Bva03g00950 574 SUPERFAMILY Protein kinase-like (PK-like) 111 370 IPR011009 -
Bva03g00950 574 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 2 60 558 - -
Bva03g00950 574 MobiDBLite consensus disorder prediction 22 91 - -
Bva03g00950 574 ProSitePatterns EF-hand calcium-binding domain. 425 437 IPR018247 -
Bva03g00950 574 SMART efh_1 522 550 IPR002048 GO:0005509
Bva03g00950 574 SMART efh_1 416 444 IPR002048 GO:0005509
Bva03g00950 574 SMART efh_1 488 516 IPR002048 GO:0005509
Bva03g00950 574 SMART efh_1 452 480 IPR002048 GO:0005509
Bva03g00950 574 ProSiteProfiles EF-hand calcium-binding domain profile. 412 447 IPR002048 GO:0005509
Bva03g00950 574 ProSiteProfiles Protein kinase domain profile. 111 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva03g00950 574 ProSitePatterns EF-hand calcium-binding domain. 531 543 IPR018247 -
Bva03g00950 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Bva03g00950 574 Pfam EF-hand domain pair 487 548 IPR002048 GO:0005509
Bva03g00950 574 Pfam EF-hand domain pair 417 477 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00950 Bva-Chr3 6587611 6596969 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00950 1 574 EF-hand Containing Proteins AT5G04870 78.084 0.0 962
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Bva03g00950 Pkinase 9.9e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00950 K13412 - tcc:18586869 1013.83