Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00935 ATGCAAAGCCCTTCTCCAGATTCTGAtgatatctcttcgttggagCGGACCGGATATGCTTATTATAGTGTTGGATTGTCCCTTGGAGTAATCTTTATGATTGTATTTGTCACTCTCATTTCACACTACTGTTGCGATAGAAATTGGCACAATTGGAGATCGCGCCAAACCGAGAGCAACCGAAGCCGGTTTCATACAGGTATGGAGAGGAGAGACACTGCGTTAACTATCCGACCTGGTTTGAATGAAGCCACTCTGAACAGTTACCCAGTGTTATTGTACTCTGAAACCAAGCTTCATAAGGGTAATTCCACTCCTTCGTGCTGCTCGATTTGCTTGGCGGATTACAAGGACTCTCACTTACTGAGACTGTTACCAGATTGTGGTCACTTTTTTCATCAGAGATGTATTGATATGTGGCTGCGTATGAACCCTTCATGTCCAATGTGTCGAACCTCTCCACTTTCAACTCCTCTTGCCGAAGTTACTCCCTTGGCAGCAGCAAGTAGTGTTTA 515 0.4311 MQSPSPDSDDISSLERTGYAYYSVGLSLGVIFMIVFVTLISHYCCDRNWHNWRSRQTESNRSRFHTGMERRDTALTIRPGLNEATLNSYPVLLYSETKLHKGNSTPSCCSICLADYKDSHLLRLLPDCGHFFHQRCIDMWLRMNPSCPMCRTSPLSTPLAEVTPLAAASSV 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00935 171 CDD RING-H2_PA-TM-RING 108 151 - -
Bva03g00935 171 SMART ring_2 109 150 IPR001841 -
Bva03g00935 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 155 IPR013083 -
Bva03g00935 171 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 8 167 IPR045899 -
Bva03g00935 171 SUPERFAMILY RING/U-box 85 154 - -
Bva03g00935 171 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Bva03g00935 171 PANTHER RING-H2 FINGER PROTEIN ATL71-RELATED 8 167 - -
Bva03g00935 171 Pfam Ring finger domain 109 151 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00935 Bva-Chr3 6370441 6370956 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00935 6 168 C3H Transcription Factor Family AT2G35910 48.503 7.45e-44 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00935 - - zju:107413119 170.629