Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00933 ATGAACAACAACACCACCACCAACTCCACCAATCATCACCATGTTGCTTCTGGTAGTGGATTCACCTATGGCATCATATTCACCATTGGTATGGTCGTTTCAATCTTAACCTTTCTTTTGGCGTGTGTCCGTCTTCGAGTCCATTTGATCATTCTCCATGTTTTGAATGGGTTACAACCAAGAAGAACAGCAGCAGTACAAGACTCTGTGGAGGTTACCAATAGACAACAAGGGCTTGACGAAACCATTATTCATAGCTATCCGAAACTCCTCTACTCTCAAATAAAGAAACGCGATTCGGTTTCATCATGCTGCTCCATTTGCCTGGCAGATTTTACTGAAGTTGATGAACTTCGTATGTTACCAGATTGTGGCCATCTTTATCATCTTAGTTGTATTGATTCCTGGCTTAAGTTGCATGCAACCTGCCCAATATGCCGAAACTCGCCTGTTAGAGCTTCGCGGACAAGTATGCCTGCAGCAGAGGTTACCATCCATATTGTTTA 506 0.4308 MNNNTTTNSTNHHHVASGSGFTYGIIFTIGMVVSILTFLLACVRLRVHLIILHVLNGLQPRRTAAVQDSVEVTNRQQGLDETIIHSYPKLLYSQIKKRDSVSSCCSICLADFTEVDELRMLPDCGHLYHLSCIDSWLKLHATCPICRNSPVRASRTSMPAAEVTIHIV 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00933 168 SUPERFAMILY RING/U-box 83 150 - -
Bva03g00933 168 SMART ring_2 105 146 IPR001841 -
Bva03g00933 168 CDD RING-H2_PA-TM-RING 104 147 - -
Bva03g00933 168 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Bva03g00933 168 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 164 IPR045899 -
Bva03g00933 168 PANTHER RING-H2 FINGER PROTEIN ATL71-RELATED 2 164 - -
Bva03g00933 168 Pfam Ring finger domain 105 147 IPR001841 -
Bva03g00933 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 151 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00933 Bva-Chr3 6355293 6355799 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00933 19 163 C3H Transcription Factor Family AT5G06490 37.126 2.41e-29 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00933 - - qsu:111987508 141.739