Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00932 ATGAACAACAGCATCACTAACTCCACCAACCATCACCATGTTTCTGTGGCTAGTGGATTCACCTATGGCATGATATTCACAGTTGGTATGATCGTTTCAATCTTAATCTTTCTCTTGGCGTGTGCCCGTCTTCGCATACATTTGATCATCTTCCATGTTTTGAGTGGACAACGACCAACAAGAACAGCAGCAGTACAAGACTCTGCAGAGGATACCAATAGAGAGCAAGGGCTTGATGAAACCACCATCCATAGCTATCCGAAGCTCCTCTACACTCAAGTACAGAATCGCGATTCCGTTTCATCGTGCTGCTCCATTTGCTTGGTGGATTTTACAGAAGTTGATGAACTTCGTATGTTACCAGATTGTGGCCATCTTTACCATCTTAATTGTGTTGATTCCTGGCTTAAGTTGCATGCAACCTGCCCAATATGCCGGAACTCACCGGTTAGGGCTTCAAAGACAAGCATGCCTGCAGAAGATGTAACCATCCATGTAGAATA 503 0.4433 MNNSITNSTNHHHVSVASGFTYGMIFTVGMIVSILIFLLACARLRIHLIIFHVLSGQRPTRTAAVQDSAEDTNREQGLDETTIHSYPKLLYTQVQNRDSVSSCCSICLVDFTEVDELRMLPDCGHLYHLNCVDSWLKLHATCPICRNSPVRASKTSMPAEDVTIHVE 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00932 167 SMART ring_2 104 145 IPR001841 -
Bva03g00932 167 PANTHER RING-H2 FINGER PROTEIN ATL71-RELATED 1 163 - -
Bva03g00932 167 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Bva03g00932 167 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 163 IPR045899 -
Bva03g00932 167 Pfam Ring finger domain 104 146 IPR001841 -
Bva03g00932 167 SUPERFAMILY RING/U-box 82 149 - -
Bva03g00932 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 150 IPR013083 -
Bva03g00932 167 CDD RING-H2_PA-TM-RING 103 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00932 Bva-Chr3 6340328 6340831 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00932 77 162 C3H Transcription Factor Family AT5G06490 50.000 9.71e-28 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00932 - - qsu:111987508 142.124