Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00929 ATGCACTCCAATTGTTCCTCAAAGATGGATAATGCCATCTTGAACAGCAACAGCACTGTGGAAGATCATGGTAATGCGAGTGGGTTTACATTTGAAATCATTTGGACGATTGTGGTTATCTTGGCAGTCATAATCACTTGTTTTGTGAGCATTCTACGCAGAAGATCTTCAGCAATTCCCAATATAATCAATGGCATGGTTGCTCGTAGTGAACATGGCTTCGACGACAACACTCTTGATAGCATTCCAAAGCTTCTGTATTCTGAAATGCAGAAAGGGAGTTTAGTCTCTTCATGCTGCTCCATCTGCTTAGGAGATTATAAAGACACTGATACCCTGAGGCTACTTCCAGAATGTGGGCATGTTTTTCATCTTAAGTGTGTTGATCCATGGCTGAAATTGCAGCCAACATGCCCAATATGCAGAAGTTCATCGGTTCAAACTCGGCAATCAAGCATTTCAACGCAGGAGACAGTGGTCCATGTTGGTAGATG 494 0.4251 MHSNCSSKMDNAILNSNSTVEDHGNASGFTFEIIWTIVVILAVIITCFVSILRRRSSAIPNIINGMVARSEHGFDDNTLDSIPKLLYSEMQKGSLVSSCCSICLGDYKDTDTLRLLPECGHVFHLKCVDPWLKLQPTCPICRSSSVQTRQSSISTQETVVHVGR 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00929 164 SUPERFAMILY RING/U-box 84 147 - -
Bva03g00929 164 PANTHER RING-H2 FINGER PROTEIN ATL71-RELATED 13 156 - -
Bva03g00929 164 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 13 156 IPR045899 -
Bva03g00929 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 147 IPR013083 -
Bva03g00929 164 Pfam Ring finger domain 100 142 IPR001841 -
Bva03g00929 164 CDD RING-H2_PA-TM-RING 99 142 - -
Bva03g00929 164 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Bva03g00929 164 SMART ring_2 100 141 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00929 Bva-Chr3 6285337 6285831 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00929 73 152 C3H Transcription Factor Family AT2G35910 57.500 9.68e-30 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00929 - - qsu:111987525 125.946