Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00908 atggatatatatatattactatttttccAATTTGACGGTGCTGATTCACAAGAAAGCCAAAGcacatttgttttgtttgtcgTTCCCTCGCTCTCCTTTCTCTTCCCCGTCGTCCGATTTCTTTCGCAAGCCAATAAGCCAATTTTTACCCATCACCACTCTTCTACATCGCGCGCGCCAAATACAAAACCACTGTTCCCTTCCCTCCACTCTCTCTGTACAGGTTTTTGTACGATGGCGGATGCACCAACGAGCTCAGCGGGTGGAAGTCACGAGAGTGGGGGCGAGCGGAGCCCACAATCAAGTATTCGGGAGCAGGACCGTTTTCTGCCGATTGCTAATATAAGTCGGATTATGAAGAAAGCGTTGCCAGCTAACGGTAAGATTGCCAAGGATGCCAAGGACACCATGCAGGAATGTGTTTCTGAATTCATCAGTTTCATCACTTGCGAGGCGAGTGATAAATgtcagaaagagaaaaggaagaccATTAATGGAGATGATTTATTGTGGGCCATGGGAACTTTAGGATTTGAGGACTACCTAGAGCCACTTAAGGTGTACCTTGGAAGGTACAGGGAGGGTGACACTAAAGGATCTGTGAGAAGTGGTGATGGATCTGCTAAGCGAGATGCAGTTGGTCTTGCCGCTCAAAATGTACAGGTGCAATTGCATAACtctta 683 0.4275 MDIYILLFFQFDGADSQESQSTFVLFVVPSLSFLFPVVRFLSQANKPIFTHHHSSTSRAPNTKPLFPSLHSLCTGFCTMADAPTSSAGGSHESGGERSPQSSIREQDRFLPIANISRIMKKALPANGKIAKDAKDTMQECVSEFISFITCEASDKCQKEKRKTINGDDLLWAMGTLGFEDYLEPLKVYLGRYREGDTKGSVRSGDGSAKRDAVGLAAQNVQVQLHNS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00908 227 PRINTS CCAAT-binding transcription factor subunit A signature 156 174 - -
Bva03g00908 227 PRINTS CCAAT-binding transcription factor subunit A signature 137 155 - -
Bva03g00908 227 PRINTS CCAAT-binding transcription factor subunit A signature 175 193 - -
Bva03g00908 227 ProSitePatterns NF-YB/HAP3 subunit signature. 140 156 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bva03g00908 227 Gene3D Histone, subunit A 96 225 IPR009072 GO:0046982
Bva03g00908 227 SUPERFAMILY Histone-fold 106 200 IPR009072 GO:0046982
Bva03g00908 227 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 109 173 IPR003958 -
Bva03g00908 227 MobiDBLite consensus disorder prediction 84 104 - -
Bva03g00908 227 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 79 215 - -
Bva03g00908 227 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 79 215 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00908 Bva-Chr3 6045622 6047432 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00908 79 221 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.649 3.67e-72 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Bva03g00908 CBFD_NFYB_HMF 5.8e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00908 K08065 - cpap:110824235 247.284