Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00903 ATGGAGCAGCAAGAAGAGCATGAAGTGTACGGAGGAGAAATTCCCGATGAGGGGGAGATGGACGCAGACTTGGAGATGTCTGCTCGGATTGAAGATGGAGAAGACGAGCATGACGGCCCCAGTGACCCAAACAAGGACTTGGAGGACATGAAGAAGAGGCTCAAGGAGATTGAAGATGAAGCTTCTGCCCTTCGCGAAATGCAGGCCAAGGTTGAGAAAGAGATGGGTCTTGTTCAAGATTCAACAGGTTCTTCTGCTAGTCAAGCTGAAAAGGAGGAAGTGGATTCTCGATCAATTTATGTTGGCAATGTCGACTATGCATGTACACCTGAGGAAGTCCAACAACACTTTCAGTCATGTGGAACTGTGAACAGAGTGACAATATTGACAGACAAGTTTGGTCAACCTAAAGGATTTGCTTATGTTGAGTTTGTTGAGGTTGATGCTGTTCAGAACGCACTTCTGTTGAATGAATCAGAACTGCATGGTCGACAATTGAAGGTCTCTGCTAAACGCACAAACGTTCCTGGAATGAAGCAGTATCGTGGAAGAAGACCTGTTGGTTCTAGAAGGCCTTTCATGCCTTCTCCGTTCTATCCTCCATATGGTTATGGAAGGTTTCCAAGGTTTAGGCGTCCAACTCGTTACAGGCCATACTA 659 0.4613 MEQQEEHEVYGGEIPDEGEMDADLEMSARIEDGEDEHDGPSDPNKDLEDMKKRLKEIEDEASALREMQAKVEKEMGLVQDSTGSSASQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPVGSRRPFMPSPFYPPYGYGRFPRFRRPTRYRPY 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00903 219 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 167 IPR000504 GO:0003723
Bva03g00903 219 MobiDBLite consensus disorder prediction 22 60 - -
Bva03g00903 219 MobiDBLite consensus disorder prediction 75 95 - -
Bva03g00903 219 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 173 IPR000504 GO:0003723
Bva03g00903 219 SMART rrm1_1 98 169 IPR000504 GO:0003723
Bva03g00903 219 Coils Coil 44 74 - -
Bva03g00903 219 SUPERFAMILY RNA-binding domain, RBD 87 193 IPR035979 GO:0003676
Bva03g00903 219 CDD RRM_II_PABPs 98 169 - -
Bva03g00903 219 MobiDBLite consensus disorder prediction 1 60 - -
Bva03g00903 219 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 4 218 - -
Bva03g00903 219 Gene3D - 20 180 IPR012677 -
Bva03g00903 219 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 4 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00903 Bva-Chr3 5983301 5995540 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00903 98 169 Eukaryotic Initiation Factors Gene Family AT2G36660 36.842 8.87e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00903 K14396 - qsu:112019850 321.627