Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00885 ATGgcagaaaaaataagatgCTCAGCCATCACGGTGGCCTTCATGGCGATGATTCTCCTTGCTGCCACCTCCGTATTCTCGGACGACACAATCCCGGTGCCCGCCGACAAGGCCCAAGTGACCACATGGTTCAACGCAAACGTGAAGCCATTGGCAGAACGAAAAGACCTTGACCCTCCATTGGTGACTgcagagaaggagaagaaagttaTTAAGGTCATGAAAGATGGTAGTGGCGATTTTACTACCATAACGGATGCCATCAAAAGCATCCCAGCAGGAAACACCAAGCGTGTGATTGTTCACATTGGAGGAGGAGTCTACAACGAGAAGATCAAAATTGAAAGGAGCAAGCCGTTCATTACACTTTATGGGTCGCCTAATAACATGCCAAACTTGACCTTTGGTGGTACTGCATTTCATCATGGCACTGTTGATAGTGCTTCATTGATCGTTGAACCTGACTACTTCGTTGCTGCAAATATCATCATCTCGAATTCTGCACCGAGGCCAGATGGGAAGAGGGCCGGAGCACAAGCCTTGGCATTGAGGATTTCCGGAGACAAAGCAACATTCTATAATTGCAAATTATTCGGATTTCAGGATACACTGTGTGATGATAAGGGCAAGCATTTTTTCAAAGATTGCATGATTCAGGGCACTGTTGATTTCATCTTCGGAAGTGGAAAGTCTATATATCTGAACACTCAATTGAATGTGCTTGGGGATAGTGGGATGACAGTAATAGCAGCACAAGCAAGAGTAACCGATACAAATGACATAGGATACTCATTTGTGCATTGCGAGGTAACCGGGACTGGGACTGGCACGTACTTGGGCAGAGCATGGACCGCAATGCCTAGAGTGATTTATGCTTACTCAACCATGTCCGGTATTGTCAACCCCGAAGGCTGGAGCGATAACATGAAGCCCGAAAATGACAAGACTGTGTATTTTGGAGAATACAAGAACAGCGGGCCAGGTGCAGATCCTAGCAAGCGTGCCAAGTTCACCAAGCAGCTAACTGAAGCAGAAGCTAAACCTTACCTCACCCTTGGATTTATTGAGGGCTCCAAATGGCTTCTTCCTGCTCCAACACTCTA 1103 0.4524 MAEKIRCSAITVAFMAMILLAATSVFSDDTIPVPADKAQVTTWFNANVKPLAERKDLDPPLVTAEKEKKVIKVMKDGSGDFTTITDAIKSIPAGNTKRVIVHIGGGVYNEKIKIERSKPFITLYGSPNNMPNLTFGGTAFHHGTVDSASLIVEPDYFVAANIIISNSAPRPDGKRAGAQALALRISGDKATFYNCKLFGFQDTLCDDKGKHFFKDCMIQGTVDFIFGSGKSIYLNTQLNVLGDSGMTVIAAQARVTDTNDIGYSFVHCEVTGTGTGTYLGRAWTAMPRVIYAYSTMSGIVNPEGWSDNMKPENDKTVYFGEYKNSGPGADPSKRAKFTKQLTEAEAKPYLTLGFIEGSKWLLPAPTL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00885 367 Gene3D - 64 364 IPR012334 -
Bva03g00885 367 PANTHER PECTINESTERASE 63-RELATED 37 362 - -
Bva03g00885 367 Pfam Pectinesterase 71 357 IPR000070 GO:0030599|GO:0042545
Bva03g00885 367 SUPERFAMILY Pectin lyase-like 68 363 IPR011050 -
Bva03g00885 367 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 37 362 - -
Bva03g00885 367 ProSitePatterns Pectinesterase signature 2. 218 227 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00885 Bva-Chr3 5831124 5833082 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00885 10 367 Carbohydrate Esterase AT1G69940 58.101 2.35e-158 447