LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva03g00883	ATGAAGCAGTTTCCTTCAAGAATGTTGATTGAGACTTGGATGAACGATTCTAGTTTAGAGAATTTAGTTGCCGATGACATGCCTAGAAAGAAGATTCCAAGATTGTCACCTGCTGGAACTAGTACTAGTTCTCATCAAGTGGAAGATGATTCTAGTTTAAAGAATTTAGTTGCCGTTGACATGCCTAGAAAGAAGATTCCAGGATTGTCACCTGCTGGTACTAGTACTAGTTCTCGTCAAGTGGAAGATGCAAAAGCAGCATCTTCTTCAAATCAATTgtgtgaaaataatttttccattCAAGATCCAAGGTCAAGAGATCAGCCTTCTACAGTGATTCGTCAAAAAGTGAAGGATGCATTGAACATGTTCCGAGAATTATCTGATCAGTTTCTGAAAGAATATGATGCAGAAAAATGTGGACGTATGAATGCCAAGAGAAAAGTTCAAATAGAGGCAGCAATGTTTCTTCGGAAGAAACATGAATGGATCAACAGTAGTAAACGGCTAGGACCAGTCCCGGGAATTGAAGTTGgtgataaattttatggtCTCCATCATCAATTTTCAAGTGGTATTGACTTCATGAAGATCAATGGGAACTTGGTGGCCACAAGTATTGTGGCATCTAATCGCTACGCCAACAGAAGATCCAATAATTCCTTGATATATATGGGTCAAGGAGGGAATCCAATGGTTTTCGGTGTTAAGCCAAAAGATCAGAAATTAAAAGGTGGAAATCTAGCCTTGCAGAATAGTATGAATGCTAAAACACCTGTGAGGCTTATCTTCAAACTTTCCTCAAGTAATATGAACTGCATTACATATGTTTATGATGGCTTGTATCAAGTGGACAAGATGACCCAAGGGAGAGGAGAATTTGGAAAGCTtgtcttcaaatttttcttgaataGAATTTCAGGACAACCCGAAAGTCTTACTCcagggaagaaaaataattcatatagCCCAAAAGGATGTGGTAATTGTTTGGATAACGAGAAATGTTTATGTGCCATAAAGAATGGTGGGAGAATACCATATGACTTGAACAGAAAACTTGTTGCTGATGGGAGGAAATCACCCATTTATGAGTGTGGTCCTTCTTGCAATTGCTCGGCCTCTTGCATCAACCGAGGAAGATTCGTTTGTGAGTATATCGGAGAATTTATCTCCGGTAAAGAAGCTGAACAAAGGCTAGTTGCTGATGGCTACGCGATTGAGTTAGGTGCTGGCAAGAGCTTCATTGATGCAACTCGACAAGGAAACGTTGCAAGATTTATAAATCACAGTTGCTCTCTAATCTTTGTGTTAAAAGATGTTCTGTATGATGATAAGAGGTTCATCCACAAAATGTTGTTTGCTGTGAAGGACATAGCTTGTGGGAGAGAGCTGACCTATGAtcacaagaagaaagaatcttA	1424	0.3708	MKQFPSRMLIETWMNDSSLENLVADDMPRKKIPRLSPAGTSTSSHQVEDDSSLKNLVAVDMPRKKIPGLSPAGTSTSSRQVEDAKAASSSNQLCENNFSIQDPRSRDQPSTVIRQKVKDALNMFRELSDQFLKEYDAEKCGRMNAKRKVQIEAAMFLRKKHEWINSSKRLGPVPGIEVGDKFYGLHHQFSSGIDFMKINGNLVATSIVASNRYANRRSNNSLIYMGQGGNPMVFGVKPKDQKLKGGNLALQNSMNAKTPVRLIFKLSSSNMNCITYVYDGLYQVDKMTQGRGEFGKLVFKFFLNRISGQPESLTPGKKNNSYSPKGCGNCLDNEKCLCAIKNGGRIPYDLNRKLVADGRKSPIYECGPSCNCSASCINRGRFVCEYIGEFISGKEAEQRLVADGYAIELGAGKSFIDATRQGNVARFINHSCSLIFVLKDVLYDDKRFIHKMLFAVKDIACGRELTYDHKKKES	474

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva03g00883	474	Pfam	Pre-SET motif	323	379	IPR007728	GO:0005634\|GO:0008270\|GO:0018024\|GO:0034968
	Bva03g00883	474	ProSiteProfiles	Pre-SET domain profile.	325	379	IPR007728	GO:0005634\|GO:0008270\|GO:0018024\|GO:0034968
	Bva03g00883	474	Pfam	SAD/SRA domain	170	309	IPR003105	-
	Bva03g00883	474	Pfam	SET domain	393	468	IPR001214	GO:0005515
	Bva03g00883	474	SMART	G9a_1	166	309	IPR003105	-
	Bva03g00883	474	ProSiteProfiles	SET domain profile.	350	470	IPR001214	GO:0005515
	Bva03g00883	474	ProSiteProfiles	YDG domain profile.	163	305	IPR003105	-
	Bva03g00883	474	SUPERFAMILY	SET domain	322	469	IPR046341	-
	Bva03g00883	474	PANTHER	HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR	321	472	-	-
	Bva03g00883	474	PANTHER	HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR	79	312	-	-
	Bva03g00883	474	SMART	set_7	356	473	IPR001214	GO:0005515
	Bva03g00883	474	MobiDBLite	consensus disorder prediction	36	51	-	-
	Bva03g00883	474	Gene3D	-	153	325	IPR036987	-
	Bva03g00883	474	MobiDBLite	consensus disorder prediction	27	110	-	-
	Bva03g00883	474	MobiDBLite	consensus disorder prediction	70	108	-	-
	Bva03g00883	474	SUPERFAMILY	PUA domain-like	153	316	IPR015947	-
	Bva03g00883	474	Gene3D	SET domain	377	474	IPR046341	-
	Bva03g00883	474	PANTHER	HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6	79	312	-	-
	Bva03g00883	474	PANTHER	HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6	321	472	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva03g00883	Bva-Chr3	5816157	5818007	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva03g00883	168	469	EF-hand Containing Proteins	AT5G13960	28.855	2.01e-33	130

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Bva03g00883		SAD_SRA	1.2e-30	CL0178

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva03g00883	-		K11420	csin:114304388	278.485