Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00877 ATGAGAAGATCGACAGGAAAGCCACAGCGTGATGTTCAAGTGGATGTGGAGGAGGTTTGGACTGTCAAGCCACTCAATCAGGACCACCGCCATGGATCCTCCTTggaatcttcttcttcttcttcttccccttctGGCTCAGCTTCTCGCTCCCAAGGTCCTGGACCTTCTACCAGTAAGACCCACCGAAATTCTGTTCCAAGAAACCACAAAATTCATCGAAAGGCAAATCCCAATTGGAAAAACCAACGTGGGCAGGTGAAATTCCAGTTTGTCAAGAAATCTGAGGTGGTTCGTTTACCTGAAGAAGTCGGTTCCTTGAGCATTAATGACGAAGTTGATGTGCCGCAAGAAAAGACTGAAGAAGAGAACAGGGGTGGGTCATTGAATACTGAGGTGAGAGAGGAGGCtcaagagagagaggaggatCGTATTCAAAGCAGGCTTGATGAGTCACTGAAAAGCTCTTTGGAAGAGGAATTACCTGAGGAGCAGCTGACGATCAATGATCAATTGCAGGAAGATGAGCTACTTGTGATGGAGTCAATATatggagaaaatattttcaacctTGATAGAAAGAAAGGCCTACGCGGTTTTCAGGTACATGTACATATTGAAGTTCCCTGTGAGATTTTGGTTACTGCAAAGCTAAACTCTCCCAATGAAGTTGAGAGCAAACACAGCAAATCAGATGACTTTTTATACTCCTTCAATGTCCAATATATTCCACCTCTTGTTTTGACATGTATATTACCTAAGACATACCCAAGCCACCAGCCACCTATTTTTGCAATCTCTGTTCGGTGGCTGGACTCTATGAGTATTTCTAGTCTATGCTCCAAGTTGGATTCAATATGGACAGAGCAGCAGGGCCAAGAAGTCTTGTACCAGTGGGTAGAATGGCTGCAGGgatcttctctttcttatcTGGGATTTGATAAGGAAATAAAGCTTGGTCCTTATGGCATGAAACATGCTGGTGATAAGCGTGCTCTTTCTGGAATTGTTTCTCCTGATGTTGATATACCTTCAATACGAAGTTACAATGATGAAAGACACCATAAGAACTTCTGCATAGAATTGCACAAATGTTGCATCTGCTTTAATGAGTATCCAGGTACTGAATTTGTCAGATTGCCATGTAAGCATTTCTTTTGCTGGAAATGCTTGCAGACGTATACAGACATCCATGTAAAAGAAGGCACCATCAATAATCTCGAATGTCTTGAAGCAAAATGTGGGGTTATGATTCCACCTAGTATCTTAAAACGATTACTTAGTGATGAAGAGCATGAACGCTGGGAGTCCTTGATGTTGGAAAAGACACTTGCAACAATGCCTGATATTGCTTATTGCCCAAGATGTCAAACACCCTGCATAGAGGATGATGACCAGCACGCTCAATGCTCAAAATGCTTCTTTAGCTTTTGTACACTTTGCCGGGAGCGACGTCATGTGGGCGTAGCATGTATGACACCAGAAATGAAGCTTCTTATTTTGCAAGAGCGCCAGAAATCATCTCAGTTAAAGGAAGATCAGAAACGTAAAGAACGTGAAATGATCAACGACATTCTCAGTATGAAAGAAATCCATCGTGATTCTAAGCAGTGCCCATCTTGTAAGATGGCAATTTCCCGTACTGAAGGTTGCAACAAAATGGAATGTTATAATTGTGGCCAATATTTCTGTTACAGATGCAGCAAAGCAATTGCCGGATACGAACATTTCAGGGATGGAACATGTGAACTGTTCCCACAAGAAATGATTCATGCCTGGGAAGAGCGGATAAATCCCCGGCAAGCGTTTGCACAGGCTCAGGCTGAACTTTTTGCAGAACATGGCATGCCATGTCCTAATTGTCGCCAATTTAACGCCAAGGTTGGAAACAATAACCACATGTTTTGCTGGGCTTGCCAAACACATTATTGCTACTTATGCAAGAAGATTGTCAGGCGTAGTTCTGAGCATTATGGACCCAGGGGCTGCAAGCAGCACACCCAGGGATA 2009 0.4146 MRRSTGKPQRDVQVDVEEVWTVKPLNQDHRHGSSLESSSSSSSPSGSASRSQGPGPSTSKTHRNSVPRNHKIHRKANPNWKNQRGQVKFQFVKKSEVVRLPEEVGSLSINDEVDVPQEKTEEENRGGSLNTEVREEAQEREEDRIQSRLDESLKSSLEEELPEEQLTINDQLQEDELLVMESIYGENIFNLDRKKGLRGFQVHVHIEVPCEILVTAKLNSPNEVESKHSKSDDFLYSFNVQYIPPLVLTCILPKTYPSHQPPIFAISVRWLDSMSISSLCSKLDSIWTEQQGQEVLYQWVEWLQGSSLSYLGFDKEIKLGPYGMKHAGDKRALSGIVSPDVDIPSIRSYNDERHHKNFCIELHKCCICFNEYPGTEFVRLPCKHFFCWKCLQTYTDIHVKEGTINNLECLEAKCGVMIPPSILKRLLSDEEHERWESLMLEKTLATMPDIAYCPRCQTPCIEDDDQHAQCSKCFFSFCTLCRERRHVGVACMTPEMKLLILQERQKSSQLKEDQKRKEREMINDILSMKEIHRDSKQCPSCKMAISRTEGCNKMECYNCGQYFCYRCSKAIAGYEHFRDGTCELFPQEMIHAWEERINPRQAFAQAQAELFAEHGMPCPNCRQFNAKVGNNNHMFCWACQTHYCYLCKKIVRRSSEHYGPRGCKQHTQG 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00877 669 SUPERFAMILY RING/U-box 525 577 - -
Bva03g00877 669 SMART ring_2 618 647 IPR001841 -
Bva03g00877 669 SMART ring_2 365 412 IPR001841 -
Bva03g00877 669 SMART ring_2 453 541 IPR001841 -
Bva03g00877 669 Coils Coil 154 174 - -
Bva03g00877 669 MobiDBLite consensus disorder prediction 109 148 - -
Bva03g00877 669 Gene3D Ubiquitin Conjugating Enzyme 162 311 IPR016135 -
Bva03g00877 669 Coils Coil 500 520 - -
Bva03g00877 669 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 132 602 IPR031127 GO:0004842|GO:0016567
Bva03g00877 669 ProSitePatterns Zinc finger RING-type signature. 382 391 IPR017907 -
Bva03g00877 669 MobiDBLite consensus disorder prediction 64 78 - -
Bva03g00877 669 Gene3D - 506 610 - -
Bva03g00877 669 MobiDBLite consensus disorder prediction 27 63 - -
Bva03g00877 669 MobiDBLite consensus disorder prediction 1 85 - -
Bva03g00877 669 SMART RWD2001b 175 310 IPR006575 GO:0005515
Bva03g00877 669 MobiDBLite consensus disorder prediction 114 148 - -
Bva03g00877 669 SUPERFAMILY RING/U-box 605 666 - -
Bva03g00877 669 MobiDBLite consensus disorder prediction 1 25 - -
Bva03g00877 669 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 132 602 - -
Bva03g00877 669 SUPERFAMILY UBC-like 169 305 IPR016135 -
Bva03g00877 669 Pfam IBR domain, a half RING-finger domain 433 491 IPR002867 -
Bva03g00877 669 Pfam IBR domain, a half RING-finger domain 529 571 IPR002867 -
Bva03g00877 669 SMART ibrneu5 520 582 IPR002867 -
Bva03g00877 669 SMART ibrneu5 433 491 IPR002867 -
Bva03g00877 669 ProSiteProfiles TRIAD supradomain profile. 361 587 IPR044066 -
Bva03g00877 669 SUPERFAMILY RING/U-box 362 446 - -
Bva03g00877 669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 361 446 IPR013083 -
Bva03g00877 669 ProSiteProfiles Zinc finger RING-type profile. 365 409 IPR001841 -
Bva03g00877 669 Pfam RWD domain 171 305 IPR006575 GO:0005515
Bva03g00877 669 ProSiteProfiles RWD domain profile. 175 310 IPR006575 GO:0005515
Bva03g00877 669 SUPERFAMILY RING/U-box 433 495 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00877 364 576 ARIADNE family AT3G27710 25.339 2.90e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00877 K11971 - jre:109019042 876.315