Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00873 ATGCTATTGCGTGCTCGCTTAACCAACCTTTGCTGCTCTCTACGCTCTGTTCTCAACGCCCCTCGGCATTCTTGCATTCACCTCAAATTATCTTCCTTAGCCAATTCCCAGGTGTCTAGTAGCTTCTTGGACAACGAATGTACTGATTTTTTGCCATGGTTGGAGCGAAAATCTGGTTCTAGGATTTCATCAACACTGTGCATTGGGAAATCTTCATATGGGAGGTCTTTGTTTGCTTCTAAGATAATACAAACTGGTGATTGCATTTTACAGGTTCCTTACAGTGTGCAAATAACAATGGATAATCTCTGTCCAGAAATTAGATCTTTGATCAGTGATGAAGTTGGAAATATTGCAAAACTTGCCATTGTTATACTTGTTGAACAGAAATCGGGTGAGGTCTCTGAGTGGGATCCTTATATTAGTCGTCTTCCTCTGGCAGGGGAGCTGCATAATACGATATTTTGGAGTGAAAATGAGTTGGAGATGATTTGTCACAGCTCTGTATACCAGGAAACTGCTAAGCTAAAGTCTCAAATTAAAAGGGATTTTTTGGCAGTCAGCCCAGTTTTTGAATGTTTCCCTCAAATTTTTGGAGATTTCACATACACAGatttcatgcatgcatgtgcaCTTGTTGGTTCTCGAGCATGGGGAAGCATGGAGGGTTTATCTTTGATTCCATTTGCAGATTTCTTAAATCATGAAGGGGTTTCAGAAGCAATTGTATTGAGTGATGATGACAAACAGTGCTCGGAGGTTGTTGCTGATCGTGACTATGCTCCTGGTGAACAGGTACTAATAAGttatggaaaattttcaaatgctACTTTGATGCTGGACTTCGGTTTCACACTTCCATACAACAATCACGATGAGGTTGAGATCCAGCTTGATATACCTAGGAGTGATCTTCTACATGACATGAAGATAGAACTCTTGCAGCAATACTTAGTGCCTACTACCAAAGAAATGAACAGTTCCAAGTATTCTGTGAATACTTTCACAATCAAGGAAGTGAGGTCTGCTAGAGGAAAAGGGAAAGGTGTACCGCAATCACTCCGTGCATTTGCTCGTATTCTTTCTTGCACAACCCCTCAAGAACTTGATGATCTAGTCATGGAGGCTGCAAAAACTGATGGCAGGCTGGCTAGGCGTCCTTTAAACAATATCAACAAAGAGATACAAGCACATCTGATGTTGTCATCGTTGTTCACTCAATTATCTGACCAGCGGATTGCAACTATTAAGTCATTGGATTCTCTTTCCCCCTCCATATTTCCTGTCAGAAAACAAATGGCTTTGGATCTTCTGGGTGGTGAGGTTCGCATTCTCAAATCTGCTTCAACCTGGCTAGAAAACTACTGCTCTACGTTAAGATTACAGTCTATTGAAGACTACTA 1403 0.4013 MLLRARLTNLCCSLRSVLNAPRHSCIHLKLSSLANSQVSSSFLDNECTDFLPWLERKSGSRISSTLCIGKSSYGRSLFASKIIQTGDCILQVPYSVQITMDNLCPEIRSLISDEVGNIAKLAIVILVEQKSGEVSEWDPYISRLPLAGELHNTIFWSENELEMICHSSVYQETAKLKSQIKRDFLAVSPVFECFPQIFGDFTYTDFMHACALVGSRAWGSMEGLSLIPFADFLNHEGVSEAIVLSDDDKQCSEVVADRDYAPGEQVLISYGKFSNATLMLDFGFTLPYNNHDEVEIQLDIPRSDLLHDMKIELLQQYLVPTTKEMNSSKYSVNTFTIKEVRSARGKGKGVPQSLRAFARILSCTTPQELDDLVMEAAKTDGRLARRPLNNINKEIQAHLMLSSLFTQLSDQRIATIKSLDSLSPSIFPVRKQMALDLLGGEVRILKSASTWLENYCSTLRLQSIEDY 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00873 467 Pfam Rubisco LSMT substrate-binding 302 445 IPR015353 -
Bva03g00873 467 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 39 454 - -
Bva03g00873 467 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 282 458 IPR036464 -
Bva03g00873 467 Gene3D - 287 460 IPR036464 -
Bva03g00873 467 CDD SET_RBCMT 63 285 IPR044431 GO:0016279|GO:0018022
Bva03g00873 467 Gene3D set domain protein methyltransferase, domain 1 43 284 - -
Bva03g00873 467 SUPERFAMILY SET domain 48 290 IPR046341 -
Bva03g00873 467 ProSiteProfiles SET domain profile. 64 271 IPR001214 GO:0005515
Bva03g00873 467 PANTHER OS01G0976450 PROTEIN 39 454 - -
Bva03g00873 467 Pfam SET domain 74 271 IPR001214 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Bva03g00873 SET 1.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00873 K19199 - gmx:100818002 595.504