Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00863 ATGGCGTCGCTACCGTACGCCGACGTAGATTCGAGCTTGAGGGCAATGGCTGGTCGAGCAGAGGGCTTTGGCCGCTTCTCAATTGGGGGCCTTCATGGTCCTCTCTATGTCGTCACCACTCTTGCAGATGATGGTCCGGGATCCCTTCGAGAAGGATGTCGTAGAAATGGGCCACTCTGGATTGTTTTTGAAGTTTCGGGTACAATTCAGCTTTCATCATACCTGAGTGTTTCATCTTACAAGACAATAGATGGCAGAGGTCAGCGGATAAAGTTTACTGGGAAGGGTTTAAGGCTGAAGGAATGTGAGCACATAATTATATGCAATCTTGAATTTGAGGGTGGTAGGGGTCATGATGTTGATGGCATTCAAATAAAACCAAACTCTCGTCACATATGGATAGATCGCTGCAGTCTTCATGATTATGATGATGGACTTATAGACATTACAAGACAAAGCACAGATATTACTGTATCTAGATGTCAGTTTGCACAACATGACAAGACCATGCTAATTGGAGCTGACCCATCTCACATTGGTGATAGATGCATACGGGTGACAATTCATCATTGCTTCTTTGATGGGACTCGGCAAAGACACCCTCGTGTGAGATTTGGAAAGGTTCATCTCTACAATAACTACACCAGAAATTGGAGTGTATATGCTATTTGTGCTAGTGTTGAATCCCAGATATACTCTCAGTGCAACATTTATGAAGcaggaaataagaaaaagacttTCGAATTTTATACGGAGAAGGCTGCAGATGCAGAAGAGCAGAAGTCTGGCTTTATAAAATCTGAAGGGGACATGCTTCTCAATGGAGCTCTACCATGCTTACCAATAGACTATAGAGAAGAATGCATGTTCCATCCTAGTGAATATTACCCAACATGGACAACAGAAGCAACTTCCCCTTCTCTTAGAGATGTCCTTCAATTATGTACCGGTTGGCAGCCCATCTGTAGGCCAGTAGACCACATGGTTTCTACATA 995 0.4291 MASLPYADVDSSLRAMAGRAEGFGRFSIGGLHGPLYVVTTLADDGPGSLREGCRRNGPLWIVFEVSGTIQLSSYLSVSSYKTIDGRGQRIKFTGKGLRLKECEHIIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLHDYDDGLIDITRQSTDITVSRCQFAQHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYTRNWSVYAICASVESQIYSQCNIYEAGNKKKTFEFYTEKAADAEEQKSGFIKSEGDMLLNGALPCLPIDYREECMFHPSEYYPTWTTEATSPSLRDVLQLCTGWQPICRPVDHMVST 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00863 331 PRINTS Pollen allergen Amb family signature 221 240 IPR018082 -
Bva03g00863 331 PRINTS Pollen allergen Amb family signature 19 36 IPR018082 -
Bva03g00863 331 PRINTS Pollen allergen Amb family signature 199 218 IPR018082 -
Bva03g00863 331 SUPERFAMILY Pectin lyase-like 17 279 IPR011050 -
Bva03g00863 331 Pfam Pectate lyase 74 237 IPR002022 -
Bva03g00863 331 SMART amb_all 43 244 IPR002022 -
Bva03g00863 331 Gene3D - 6 306 IPR012334 -
Bva03g00863 331 PANTHER PECTATE LYASE 18-RELATED 1 324 IPR045032 GO:0030570
Bva03g00863 331 PANTHER PECTATE LYASE 1 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00863 Bva-Chr3 5600389 5604677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00863 41 329 Polysaccharide Lyase AT3G55140 78.893 3.38e-179 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00863 K01728 - gmx:100802068 604.749