Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00828 ATGGTGGGTGAGGACGATGCTCGAGCTCCATGCCAGCTTTCCGGTAACCGGAAAGTGTTCTGGCGGTCGGCTTCTTGGTCTTCTTCCCGTTCCGCCGCTCACAACCCGAACGGTGAGGAAAAGGATTTTACAGATCCAGATGGCAATATTAGCAATACCAATGAGCAAACTCGTAGGTATCCTCCCGCTCCGTTAACCCCTCGATCCCAACATAATTGCAAGGCTCGGTCCAGTTTGCCGCCGTTACAGCCACTGTCGATTGCTCGGAGGAGCTTGGATGAGTGGCCCAAGGCAAGTTCGGATGATATCGGGGAGTGGCCAGTGCCACAACCCCCTACACCAAGTGGAAGAGGAAGCGCGGAAAGGTTGAAGCTTGATTTGTCATCAATTCAGAGAAACCCAGATAAGAATGGAGGGCTTGTGAAGAGAGACAAGATTGCTTTCTTTGATAAAGAATGCTCAAAAGTAGCTGAACATATATACCTTGGTGGAGATGCTGTCGCCAGAGATAGGGATATACTGAAACAGAATGGGATTACCCATGTTCTGAACTGTGTAGGTTTTGTTTGTCCTGAGTACTTCAAAGCAGATTTTGTGTATAGAACATTGTGGTTGCAAGATAGTCCATCAGAGGATATTACTAGCATTCTGTATGATgtgtttgattattttgaagatGTTAGGGAGCAAGGTGGAAGGGTGTTTGTGCATTGTTGCCAAGGGGTGTCTCGGTCCACTTCTCTGGTGATTGCATACCTGATGTGGAGGGAAGGGCAGAGTTTTGATGATGCTTTTCAGTATGTGAAGGCAGCGAGAGGTATTGCTGATCCAAATATGGGTTTTGCCTGCCAATTGTTACAATGCCAGAAAAGGGTTCATGCGTTTCCACTTAGCCCAAGCTCTCTGCTGAGAATGTATAGAATTGCCCCACATTCACCATATGATCCTTTGCATCTTGTCCCAAAAATGTTAACTGATCCTTCTTCATCTGCTCTGGATTCCAGAGGTGCATTTATCATTCATATACCTTCTGCAATATATGTTTGGATTGGTAAGTATTGTGAGGCCATCATGGAAAGGGATGCTAGAGGGGCTGTGGGTCAGATTTTTCGGTATGAGAGAGTGCAGGGCCCAATTGTAATGATTAAGGAAGGTGAAGAACCATCATACTTTTGGGAtgccttttcaaaatttttgccTTTGATGGACAAATCTGGCAATAGACTAGAAACTAGCAAATCAAGTGTTAAGATATGTCCTGGTGAGAGGAAGGTGGACTCATATAATGTTGACTTTGAAGTGTTCCAGAAAGCAATCATGGGAGGCTTTGTGCCTCCATTTGCATCATCTGAGGATGAACTTGAAACCCATCTTCCTGCTAGAGAGAGCAGTTGGAGTGTATTAAGGCGCAAATTTGCCTCTGCCAATATGAGAGAGTTTGTCTCAGTACCTAAGTTATCCTTTTCAAGGGTTTATTCTGACTCCATGTTGTGTATCCATTCATCAACACATTCATCACCATCCTCATTTTCAtcgtcatcatcatcatctttatcatcttcttcttcatcaccTGCATACCTCTCTCCAGATTCAATTTCTTCTGATTCAAGCTCTAATTCAAAGTGTTTTTCAGAATCATCCCTGGATTCTCCATTGGCAGCTTCATCTTCCATTCCAATTTCTTCATCCTTGTCTAATTTTTCTAACTTGTCCCTCCTTTCATCCAATTGTACTTCTCAGCCAGCATCTAATAATGCAGAAGTTCATTGTGTTGATTTGACATCACAGCCTTGTTCTCTGTCAGCCTTATCTAAATTGAGAAAACCTTCAACTTCACTTGCTGAGCGCAGAGGTAGTTTGTCAAAGTCTTTGAAGTTGCCAGTGACGAATGATAAGACCAGAATGATAAATAGATCATCAACCTTTCATGCTAGTCGAAAAGATGATGTTGTCTTGAACAGCAATGTTAACTGTTCACATCAATCAGATGATACAGACCGTTTATCTGAGTCTAGCAACTGTGTTGAGAGTAGAGTAAACTCATTTGAAAAAGGAGTTACTTTCACTGAGAACTGTGGTGAATCTTGGGTAGATAGTTCCTCAAAAGAAGAACTCAAGTCTGGTTCATGTAATGGAATTGATGAAAGCGCTTTATTACTatgtagtatgacacaaaCTTTAGTATATCGCTGGCCGAGTTTAGAGAAGATTGCAACATTTGGTGCAGGTGATATGGATTCTAAAGCTGCTTTTGCTATTTTCTCTCTAAGTACGAGTAAAAATGCAGAAAGCATTTTGTACTTTTGGGTGGGGAGGTCATTCAACTGTGATGTATCTCAGGTTCAGTTAGATAGTGATAGAGAGTCAGATTACCTAGGAGTGAATGACTGGAATCGGATTGGTTCTGATGTCCTTGCTCAGTTCAACGTGCCGAAGGACACAGTCATCAAGATTGTTAAAGAGAATGAAGAACCAGCAGAGTTTCTAGCTTTTCTGATACCTTTTAGTTGCACAAATTTTCAGGCTTTAATTGACCTTCTCTCCCGTGAAAGAATACTGGCGAGGAGGTTGCTTGTCAGTCCATGCTA 2591 0.4118 MVGEDDARAPCQLSGNRKVFWRSASWSSSRSAAHNPNGEEKDFTDPDGNISNTNEQTRRYPPAPLTPRSQHNCKARSSLPPLQPLSIARRSLDEWPKASSDDIGEWPVPQPPTPSGRGSAERLKLDLSSIQRNPDKNGGLVKRDKIAFFDKECSKVAEHIYLGGDAVARDRDILKQNGITHVLNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSPYDPLHLVPKMLTDPSSSALDSRGAFIIHIPSAIYVWIGKYCEAIMERDARGAVGQIFRYERVQGPIVMIKEGEEPSYFWDAFSKFLPLMDKSGNRLETSKSSVKICPGERKVDSYNVDFEVFQKAIMGGFVPPFASSEDELETHLPARESSWSVLRRKFASANMREFVSVPKLSFSRVYSDSMLCIHSSTHSSPSSFSSSSSSSLSSSSSSPAYLSPDSISSDSSSNSKCFSESSLDSPLAASSSIPISSSLSNFSNLSLLSSNCTSQPASNNAEVHCVDLTSQPCSLSALSKLRKPSTSLAERRGSLSKSLKLPVTNDKTRMINRSSTFHASRKDDVVLNSNVNCSHQSDDTDRLSESSNCVESRVNSFEKGVTFTENCGESWVDSSSKEELKSGSCNGIDESALLLCSMTQTLVYRWPSLEKIATFGAGDMDSKAAFAIFSLSTSKNAESILYFWVGRSFNCDVSQVQLDSDRESDYLGVNDWNRIGSDVLAQFNVPKDTVIKIVKENEEPAEFLAFLIPFSCTNFQALIDLLSRERILARRLLVSPC 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00828 863 Gene3D Severin 303 399 IPR029006 -
Bva03g00828 863 PANTHER MKPA PROTEIN 1 830 - -
Bva03g00828 863 CDD DSP 153 287 - -
Bva03g00828 863 Gene3D Protein tyrosine phosphatase superfamily 140 294 IPR029021 -
Bva03g00828 863 MobiDBLite consensus disorder prediction 22 121 - -
Bva03g00828 863 ProSitePatterns Tyrosine specific protein phosphatases active site. 236 246 IPR016130 GO:0016311|GO:0016791
Bva03g00828 863 ProSiteProfiles Dual specificity protein phosphatase domain profile. 152 294 IPR020422 GO:0006470|GO:0008138
Bva03g00828 863 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 211 272 IPR000387 GO:0016311|GO:0016791
Bva03g00828 863 SMART dsp_5 152 291 IPR020422 GO:0006470|GO:0008138
Bva03g00828 863 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 1 830 - -
Bva03g00828 863 SUPERFAMILY Actin depolymerizing proteins 299 401 - -
Bva03g00828 863 MobiDBLite consensus disorder prediction 504 523 - -
Bva03g00828 863 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 147 293 IPR029021 -
Bva03g00828 863 Pfam Dual specificity phosphatase, catalytic domain 160 290 IPR000340 GO:0008138|GO:0016311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00828 Bva-Chr3 5175939 5181805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00828 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 63.731 1.47e-70 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00828 - - mtr:MTR_7g023250 1078.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00828 03 5175939 5181805 Bva03g00828 03 5175939 5181805 ECH