Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00824 ATGATGATATCGAGGGGGCTGTTTGGGTGGTCCCCACCCCATATACAACCACTAACGCCGGTCTCGGAGGTCTCTGAACCGCCGGAGTCGCCATCTCCGTACTTGGACCCTGGAGCGGAGTTGTCTGCGACGCAGCAAGTCGAGCTTGAGGAGGAGGTTGAGGAGCCTGAGGAGATTGAGCCTCCACCAGCCGCCGTTCCTTTCTCTGGGCTCTTTGCTTGCGCCGACCAGCTTGACTGGGTTTTGATGTTTGTCGGATCGCTGGCTGCCGCTGCTCATGGTACGGCTCTCGTTGTGTACTTGCACTACTTTGCGAAGATTATTCAAGTACTAAGGATGGGTCCCAATCCTGATCGACCAGAGGAGCAGTTTGATAGGTTCACAGAGCTTGCTTTAACCATTGTTTATATTGCTGTGGGAGTTTTTGCTGCTGGTTGGATTGAGGTTTCATGCTGGATTCTGACTGGAGAACGTCAGACTGCTGTTATCAGGTCAAAATATGTTCATGTGTTACTTAACCAAGACATGAGTTTTTTTGACACTTATGGGAATAATGGAGACATTGTGAGTCAAGTATTGAGCGATGTCCTACTCATTCAGTCTGCTCTTAGTGAAAAAgttggaaattatattcataataTGGCTACATTCTTCAGTGGTCTTGTTATCGGGTTTGTCAACTGTTGGCTGATTGCATTGATAACATTATTAACTGGTCCATTTATTGTTGCTGCGGGAggaatatcaaatatattccTCCATAGGCTGGCAGAGAATATTCAAGATGCTTATGCTGAAGCAGCTAGCATTGCTGAACAGGCAGTATCCTATACAAGGACATTGTATGCATTCACGAATGAAACATTGGCCAAGTATTCATATGCAACATCACTGCAGGCTACTCTTAGATATGGTATCTTAATAAGTCTTGTCCAAGGACTTGGACTTGGATTTACTTATGGCTTTGCAATATGTTCTTGTGCGTTACAACTCTGGGTTGGAAGGTTCTTGGTTATGCATGGAAAAGCTCATGGTGGTGAAATTATAACAGCTCTGTTTGCTGTAATTCTAAGTGGCTTGGGATTAAATCAAGCAGCAACTAATTTCTACTCATTCGATCAAGGACGAATAGCTGCTTATAGACTTTTTGAGATGATAAGCCGGTCATCCTCGTCAGTTAATAATGATGGAACTACCCCAGATTCTGTACAGGGAAATATAGAGTTTCGGAATGTATATTTCAGCTATCTGTCTCGTCCTGAAATCCCTATCTTGAGTGGGTTCTATCTTTCTGTACCTGCTAAGAAAGCTGTGGCACTTGTTGGCAGAAATGGCTCTGGAAAAAGTAGTATCATTCCTCTCATGGAGCGTTTCTATGATCCTACATTAGGAGAAGTTCTTTTGGATGGTGAGAACATCAAGAATCTGAAACTGGAATGGCTGAGGAGCCAAATAGGACTAGTCACCCAGGAGCCTGCTTTGCTTAGTTTGAGTATAAGAGACAACATTGCTTATGGGAGAGATGCTACAATGGATCAAATTGAAGAGGCTGCTAAAATAGCACATGCGCATACATTTATCAGCTCTTTAGAGAAAGGTTATGACACACAGGTTGGCAGAGCTGGTCTAGCCTTGACAGAAGagcagaaaataaaactttctaTTGCAAGAGCTGTGCTTCTAAATCCATCTATTCTTCTGCTTGATGAGGTGACTGGTGGACTGGATTTTGAGGCTGAAAGGGCTGTTCAGGAGGCTCTGGATCTCCTCATGTTGGGACGCTCTACAATAATAATTGCTCGGAGGCTTAGCCTTATAAAGAACGCTGATTATATTGCTGTTATGGAGGAAGGTCAACTTGTTGAAATGGGTACTCATGATGAGTTATTAACCCTGGATGGCTTATATGCAGAGCTTCTTCGATGTGAAGAGGCTGCAAAACTTCCCAAGAGGATGCCTGTGAGGAACTATAAGGAGACTGCAGCTTTCCAAATTGAGAAGGATTCTTCAGCAAGTCATAGCTTCAAAGAACCATCATCCCCTAAAATGATGAAGTCACCTTCCCTTCAGAGAATTTCTAATGTATTGCGATCTTCAGATGGTATCTTTAATTCACAGGAATCACCCAAAGTTCGGAGTCCACCACCTGAGATGTTGGAAAATGGTCAGTCTTTGGATGCAGAGAAGGAACCATCAATAAGAAGGCAGGATagttttgaaatgaaattgcCAGAGTTACCCAAGATTGATGTGCATGCTGTGAATCGACAAAAATCAAATGGTTCTGACCCAGAGTCCCCTGTTTCACCTCTCTTAACATCTGATCCTAAAAATGAGCGGTCCCATTCTCAGACTTTTAGTAGACCCCATAGTCACTCTGACGATTTTTCTGTGAAGGAGGGAGAAGGAAAGGATGCACGGCATCGGGAACCACCATCACTTTGGAGACTGGCAGAGCTTAGTTTTGCAGAGTGGCTTTATGCTGTGTTAGGAAGCATAGGTGCAGCTATCTTTGGTTCTTTCAATCCTCTTCTTGCTTATGTTATTGGCCTGGTGGTGACAGCTTATTATAGAATTGATGAAGGTCAACACCTGAGAAAAGAGATTGACAAGTGGTGCTTGATCATTGCTTGCATGGGTATTGTGACAGTTGTTGCTAACTTTTTGCAGCATTTTTACTTTGGAATTATGGGGGAGAAAATGACAGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTACGTAATGAGGTTGGATGGTTTGATGAAGAGGAAAACAGTGCTGACAATTTATCCATGCGCTTGGCAAATGATGCTACATTTGTACGAGCTGCTTTTAGCAATCGACtttctatatttattcaaGATAGTGCTGCAGTTCTTGTTGCTGTTCTTATTGGTGTCTTACTGCACTGGCGATTGGCACTTGTGGCTTTAGCAACCCTTCCAATTCTCACTGTTTCTGCTGTTGCCCAGAAATTATGGCTTGCTGGATTTTCAAGGGGCATACAGGAAATGCACAGAAAGGCATCTTTGGTTCTTGAAGATGCAGTTAGAAACATTTACACTGTTGTAGCATTTTGTGCTGGTAACAAGGTAATGGATCTCTATAGGCTGcagttaagaaaaatatttaagcaGAGCTGTCTTCATGGGATGGCAATTGGTTTTGCATTTGGCTTTTCACAGTTTCTACTTTTCGGTTGCAATGCCCTTCTACTTTGGTACACTGCACTatgcataaaaagaaattatatggaTCCGCCTACCGCGCTCAAAGAGTATATGGTTTTCTCCTTTGCTACATTTGCTCTAGTGGAGCCTTTTGGATTGGCTCCATACATACTTAAACGACGTAAATCCCTCATTTCAGTGTTTGAAATCATAGATCGTGTTCCAAAAATTGATCCTGATGATAACTCTGCATTGAAGCCTCCCAATGTTTACGGAAGCATTGAGTtgaaaaatgttgatttttgTTACCCTACTCGTCCAGAAGTATTGGTATTGAGCAATTTTACTCTCAAAGTGACTGGAGGGCAGACAGTCGCTGTTGTGGGAGTTTCAGGTTCAGGAAAGAGCACTATAATATCTTTGATTGAAAGATTTTATGATCCAGTTGCTGGCCAAATTTTACTTGATGGAAGGGatttaaaactatataatttGAGATGGTTGAGGAGTCACCTAGGTCTCGTTCAGCAGGAACCTATTATCTTCTCAACAACAATAAGGGAAAACATCATATATGCAAGGCATAATGCCAGTGAAGCTGAGATGAAAGAGGCTGCAAGAATAGCAAATGCTCACCATTTTATTAGCAGCTTGCCTCATGGTTATGACACTCATGTTGGAATGAGAGGTGTTGACTTGACCCCTGGGCAGAAACAAAGAATTGCAATTGCAAGGGTAGTGCTGAAGAATGCACCTATCTTGTTATTGGATGAAGCAAGCTCATCAATTGAATCTGAGTCTAGCAGAGTGGTGCAAGAGGCTCTGGACACTCTAATCATGGGAAACAAGACTACCATCCTAATAGCACATAGGGCTGCAATGATGAGGCATGTAGACAACATAGTAGTTCTTAACGGAGGACGGATAGTGGAGGAAGGATCCCATGATTCATTGGTGGCAAAGAATGGTCTCTATGTCCGCTTGATGCAACCTCACTTCGGCAAGGCTTTACGCCAACATCGGCTTGTTTA 4205 0.4176 MMISRGLFGWSPPHIQPLTPVSEVSEPPESPSPYLDPGAELSATQQVELEEEVEEPEEIEPPPAAVPFSGLFACADQLDWVLMFVGSLAAAAHGTALVVYLHYFAKIIQVLRMGPNPDRPEEQFDRFTELALTIVYIAVGVFAAGWIEVSCWILTGERQTAVIRSKYVHVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGFVNCWLIALITLLTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYTRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGFAICSCALQLWVGRFLVMHGKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSVNNDGTTPDSVQGNIEFRNVYFSYLSRPEIPILSGFYLSVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATMDQIEEAAKIAHAHTFISSLEKGYDTQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIKNADYIAVMEEGQLVEMGTHDELLTLDGLYAELLRCEEAAKLPKRMPVRNYKETAAFQIEKDSSASHSFKEPSSPKMMKSPSLQRISNVLRSSDGIFNSQESPKVRSPPPEMLENGQSLDAEKEPSIRRQDSFEMKLPELPKIDVHAVNRQKSNGSDPESPVSPLLTSDPKNERSHSQTFSRPHSHSDDFSVKEGEGKDARHREPPSLWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLVVTAYYRIDEGQHLRKEIDKWCLIIACMGIVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVLVAVLIGVLLHWRLALVALATLPILTVSAVAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMDLYRLQLRKIFKQSCLHGMAIGFAFGFSQFLLFGCNALLLWYTALCIKRNYMDPPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDNSALKPPNVYGSIELKNVDFCYPTRPEVLVLSNFTLKVTGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQILLDGRDLKLYNLRWLRSHLGLVQQEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGSHDSLVAKNGLYVRLMQPHFGKALRQHRLV 1401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00824 1401 Gene3D - 397 644 IPR027417 -
Bva03g00824 1401 Gene3D - 1150 1389 IPR027417 -
Bva03g00824 1401 Gene3D ABC transporter type 1, transmembrane domain 71 659 IPR036640 GO:0005524|GO:0016021
Bva03g00824 1401 MobiDBLite consensus disorder prediction 755 780 - -
Bva03g00824 1401 Pfam ABC transporter 1170 1318 IPR003439 GO:0005524
Bva03g00824 1401 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 829 1121 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva03g00824 1401 PANTHER ABC TRANSPORTER B FAMILY MEMBER 20-RELATED 19 1397 - -
Bva03g00824 1401 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 84 374 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva03g00824 1401 Pfam ABC transporter 428 572 IPR003439 GO:0005524
Bva03g00824 1401 MobiDBLite consensus disorder prediction 723 752 - -
Bva03g00824 1401 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1152 1389 IPR003439 GO:0005524
Bva03g00824 1401 MobiDBLite consensus disorder prediction 18 60 - -
Bva03g00824 1401 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 382 - -
Bva03g00824 1401 PANTHER ABC TRANSPORTER B FAMILY 19 1397 - -
Bva03g00824 1401 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 407 642 IPR003439 GO:0005524
Bva03g00824 1401 Gene3D ABC transporter type 1, transmembrane domain 770 995 IPR036640 GO:0005524|GO:0016021
Bva03g00824 1401 Gene3D ABC transporter type 1, transmembrane domain 999 1149 IPR036640 GO:0005524|GO:0016021
Bva03g00824 1401 MobiDBLite consensus disorder prediction 668 688 - -
Bva03g00824 1401 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 396 641 IPR027417 -
Bva03g00824 1401 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1141 1388 IPR027417 -
Bva03g00824 1401 SUPERFAMILY ABC transporter transmembrane region 815 1137 IPR036640 GO:0005524|GO:0016021
Bva03g00824 1401 SUPERFAMILY ABC transporter transmembrane region 71 382 IPR036640 GO:0005524|GO:0016021
Bva03g00824 1401 MobiDBLite consensus disorder prediction 700 809 - -
Bva03g00824 1401 Coils Coil 253 273 - -
Bva03g00824 1401 SMART AAA_5 434 613 IPR003593 -
Bva03g00824 1401 SMART AAA_5 1179 1366 IPR003593 -
Bva03g00824 1401 Pfam ABC transporter transmembrane region 834 1098 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva03g00824 1401 Pfam ABC transporter transmembrane region 84 357 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva03g00824 1401 MobiDBLite consensus disorder prediction 781 809 - -
Bva03g00824 1401 CDD ABC_6TM_Pgp_ABCB1_D2_like 824 1135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00824 Bva-Chr3 5127175 5142800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00824 53 700 Calmodulin-binding Proteins AT2G36910 44.717 9.20e-170 541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00824 03 5127175 5142800 Bva03g00824 03 5127175 5142800 ECH