Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00820 atgaagagagaaagagagattgatAACTTAACCTTGGCCAATTGCTTGATGCTACTTTCTCGCCAAGGAGAAAAATTTGAGGCATCGTATTCTAATTCTTCTTCCAGCCACCGTGTCTTCGAATGCAAGACCTGCAACCGGCAGTTCCCGTCGTTTCAAGCCCTCGGCGGCCACCGGGCCAGCCACAAGAAGCTGCGGCTGATGGCCGGAGCAGACGGATCAGAACATGACAGCCACGAGTCTCTGGCTCCGGCGAAACCTAAAACACACGAGTGCGCCATTTGTGGATTGGAGTTTGCAATAGGGCAGGCCCTGGGAGGTCACATGAGGAGGCACAGAGCAGCAGCCATGAATGAAATCATGCAGAGCAGTGCTTCTAATTTTACTATGAGCAGCGGCAGCGGCAGTAGCTTTGATTCATCTTCGGCTAccaagaagaaagataataCCAAGAGAGTTTTGTTCATGGATTTGAATTTGACTCCATTGGAGAATGATTTGCAGATTTTGAGGATTCGAAGGCTGGCAACTCCTTTGGTGGATTGCTTCTATTG 554 0.4657 MKREREIDNLTLANCLMLLSRQGEKFEASYSNSSSSHRVFECKTCNRQFPSFQALGGHRASHKKLRLMAGADGSEHDSHESLAPAKPKTHECAICGLEFAIGQALGGHMRRHRAAAMNEIMQSSASNFTMSSGSGSSFDSSSATKKKDNTKRVLFMDLNLTPLENDLQILRIRRLATPLVDCFY 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00820 184 PANTHER ZINC FINGER PROTEIN ZAT12 11 170 - -
Bva03g00820 184 Gene3D Classic Zinc Finger 19 116 - -
Bva03g00820 184 Pfam C2H2-type zinc finger 90 114 - -
Bva03g00820 184 Pfam C2H2-type zinc finger 39 64 - -
Bva03g00820 184 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Bva03g00820 184 PANTHER ZINC FINGER PROTEIN ZAT5 11 170 - -
Bva03g00820 184 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Bva03g00820 184 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Bva03g00820 184 SMART c2h2final6 40 62 IPR013087 -
Bva03g00820 184 SMART c2h2final6 90 112 IPR013087 -
Bva03g00820 184 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Bva03g00820 184 SUPERFAMILY beta-beta-alpha zinc fingers 38 112 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00820 Bva-Chr3 5103181 5103735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00820 12 175 C2H2 Transcription Factor Family AT2G28710 43.787 2.72e-37 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva03g00820 zf-C2H2_6 6.2e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00820 - - gmx:100500371 220.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00820 03 5103181 5103735 Bva03g00820 03 5103181 5103735 ECH