Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00793 ATGAAGCAGCTTGTGCTGTTACGTCTTGATGAAAACAAGTTGTCTGGGGATATTCCCTTGGAGCTTGGAGAATGTTCAGGATTACAACAACTTTTGATGGGTGGAAACTTCTTCCAAGGAAGCATTCCTTCATCCTTTGGCTCTTTAAAATCCCTGGAATTCTTTGATCTTTCTAGGAACAACTTATCAGGCCCAATCCCTGGTGAACTgagaaaactttcaattttcaagagCTTGAACTTGTCTTTCAACCATCTGCATGGTGAGGTTCCAATTGGAGGAGTGTTTAATAACATTACTGGACTTTCACTCTATGGAAATGATTATCTTTGTGGTGGGATACCTGAACTGAAGTTGCCTGCATGCCCTGTCATACACTTGAAGAAACCCAAGAAGCCTCTACATTTGAAAGTTATCCTCATTATTGTAGTTACTGGGGCgtttctttgttctttagtTTTGATCATTATATTGCATATgatcaaaaaaccaaaaagattaTCCTCAGCCAATTCTTTTGAAGATAGGCTCTTGATGGTTTCTTATGGTGAGCTTTATGAAGCAACCAGTGGATTTTCTTCAACCAATTTAATTGGTACAGGGAGTTTTGGCACTGTACACAAAGGAACTCTTAGATGTTTCAACAAACCTATTGCTGTGAAGGTGCTAAATCTTCAAACACATGGGGCATCAAAGAGTTTTGTGGCTGAGTGTAGAGCTTTGGCTACAGTTCGACATAGAAATCTTGTGAAATCCTTACTTGTTGCTCCAGTATTGACTACAAGGGTGCAGATTTCAAAGCACTGGTTAGATGTAGCCATAGATATTGCTCAAGCGTTGGATTATCTTCACAATGATTCTGAGGAAGTAATTGTTCATTGTGACATAAAAGCCAGCAACATTTTTCTTGATGATGACATGGTTGCGCACTTGGGAGACTTTGGGTTAGCTACGCTCATTGATGAGGCTAAGGGCAATGCCAATAGAGAGAAAGTCACATCCTCTACTGTAAAAGTCGACTGTAAAAGGAACCATTGGATATA 1043 0.3787 MKQLVLLRLDENKLSGDIPLELGECSGLQQLLMGGNFFQGSIPSSFGSLKSLEFFDLSRNNLSGPIPGELRKLSIFKSLNLSFNHLHGEVPIGGVFNNITGLSLYGNDYLCGGIPELKLPACPVIHLKKPKKPLHLKVILIIVVTGAFLCSLVLIIILHMIKKPKRLSSANSFEDRLLMVSYGELYEATSGFSSTNLIGTGSFGTVHKGTLRCFNKPIAVKVLNLQTHGASKSFVAECRALATVRHRNLVKSLLVAPVLTTRVQISKHWLDVAIDIAQALDYLHNDSEEVIVHCDIKASNIFLDDDMVAHLGDFGLATLIDEAKGNANREKVTSSTVKVDCKRNHWI 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00793 347 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 2 253 - -
Bva03g00793 347 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 269 329 - -
Bva03g00793 347 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 2 253 - -
Bva03g00793 347 Gene3D Ribonuclease Inhibitor 1 127 IPR032675 -
Bva03g00793 347 ProSitePatterns Serine/Threonine protein kinases active-site signature. 291 303 IPR008271 GO:0004672|GO:0006468
Bva03g00793 347 SUPERFAMILY Protein kinase-like (PK-like) 168 324 IPR011009 -
Bva03g00793 347 SMART serkin_6 192 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva03g00793 347 Pfam Protein tyrosine and serine/threonine kinase 195 253 IPR001245 GO:0004672|GO:0006468
Bva03g00793 347 ProSitePatterns Protein kinases ATP-binding region signature. 198 221 IPR017441 GO:0005524
Bva03g00793 347 SUPERFAMILY L domain-like 2 112 - -
Bva03g00793 347 Gene3D Transferase(Phosphotransferase) domain 1 261 341 - -
Bva03g00793 347 ProSiteProfiles Protein kinase domain profile. 192 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva03g00793 347 Gene3D Phosphorylase Kinase; domain 1 156 255 - -
Bva03g00793 347 Pfam Protein kinase domain 271 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva03g00793 347 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 269 329 - -
Bva03g00793 347 Pfam Leucine rich repeat 27 86 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00793 Bva-Chr3 4867079 4868220 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00793 3 91 Receptor kinase-like Gene Family AT5G20480 37.079 5.87e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Bva03g00793 Pkinase 1.4e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00793 - - ccaj:109813865 355.91