Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00790 ATGAAGCAGCTTGTGGTGTTACGTCTTTATGAAAACAAGTTGTCTGGGGATATTCCCTTGGAGCTTGGGGAATGTTCAGGATTACAAGAACTTTTGTTGGGTGGAAACCTCTTCCAAGGAAGTATTCCTTCATCCTTTGGCTCTTTAAAATCCCTGGAATTCTTAGATCTTTCTAGGAACAACTTATCAGGCACAATCCCTGGTGAACTGAGAAAACTTTCAATGTTGAAGAGCTTGAACCTGTCTTTCAACCATCTTTATGGTGAGATTCCAACTGGTGGGGTGTTTAGTAACATTACTGGACTTTCACTCTACGGAAATGAGAATCTTTGTGGTGGGTTACCTGAAATAAAACTGCCTGCATGCCCGGTCAAGCACTTGAAGAAACCCAAGAAGCCTCTACATTTCAAAGTTATCCTCATTATTGTAGTTACTGGGGCgtttctttgttctttagttttgatcattatattttatacgatcaaaaaaccaaaaaggttATCCTCAGCCAATTCTTTTGAAGATAGGCTCTTGATGGTTTCTTATGGTGAGCTTTATGAAGCAACCAGTGGATTTTCTTCAACCAATTTAATTGGCACAGGGAGTTTTGGCTCTGTATACAAAGGAACTCTTAGATGTTTCAACAAACCTATTGCTGTGAAGGTGCTAAATCTTCAAACACATGGGGCATCAAAGAGTTTTGTGGCTGAGTGTAGAGCTTTGGCTAGAGTTCGACATAGAAATCTTGTGAAAATCCTTACTTGTTGCTCGAGTATTGACTACAAGGGTGCAGATTTCAAAGCACTGGTCTTTGAATTCATGCCTAATGGAAGTCTGGAAAATTGGTTGCACAAAGATCAGCAGCATTGTGAGTCAGAGAACAAAAATCTGAACCTCATACAAAGGTTAGATGTAGCCATAGATGTTGCTCAAGCATTGGATTATCTTCACAATGATTCTAAGGAAGTAATTGTTTATTGTGACATAAAGCCCAGCAACATTTTTCTTGATGATGACATAGTTGCGCACTTGGGAGACTTTGGGCTAGCTAGGCTCCTTGATGAGGCTAAGGGCAATGCCAATAGAGAGAAAGCCACATCCTCTACCGTAAAAGGAACCATTGGATATATTGCCCCCGGTAACATATTATCTTActctcttta 1163 0.3835 MKQLVVLRLYENKLSGDIPLELGECSGLQELLLGGNLFQGSIPSSFGSLKSLEFLDLSRNNLSGTIPGELRKLSMLKSLNLSFNHLYGEIPTGGVFSNITGLSLYGNENLCGGLPEIKLPACPVKHLKKPKKPLHFKVILIIVVTGAFLCSLVLIIIFYTIKKPKRLSSANSFEDRLLMVSYGELYEATSGFSSTNLIGTGSFGSVYKGTLRCFNKPIAVKVLNLQTHGASKSFVAECRALARVRHRNLVKILTCCSSIDYKGADFKALVFEFMPNGSLENWLHKDQQHCESENKNLNLIQRLDVAIDVAQALDYLHNDSKEVIVYCDIKPSNIFLDDDIVAHLGDFGLARLLDEAKGNANREKATSSTVKGTIGYIAPGNILSYSL 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00790 387 Gene3D Ribonuclease Inhibitor 1 129 IPR032675 -
Bva03g00790 387 Pfam Leucine rich repeat 27 86 IPR001611 GO:0005515
Bva03g00790 387 PRINTS Leucine-rich repeat signature 52 65 - -
Bva03g00790 387 PRINTS Leucine-rich repeat signature 73 86 - -
Bva03g00790 387 SMART serkin_6 192 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva03g00790 387 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 2 379 - -
Bva03g00790 387 Gene3D Phosphorylase Kinase; domain 1 157 273 - -
Bva03g00790 387 SUPERFAMILY L domain-like 2 111 - -
Bva03g00790 387 Pfam Protein kinase domain 194 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva03g00790 387 ProSitePatterns Protein kinases ATP-binding region signature. 198 221 IPR017441 GO:0005524
Bva03g00790 387 SUPERFAMILY Protein kinase-like (PK-like) 167 383 IPR011009 -
Bva03g00790 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 324 336 IPR008271 GO:0004672|GO:0006468
Bva03g00790 387 Gene3D Transferase(Phosphotransferase) domain 1 274 386 - -
Bva03g00790 387 ProSiteProfiles Protein kinase domain profile. 192 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva03g00790 387 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 2 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00790 Bva-Chr3 4812043 4813277 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00790 3 92 Receptor kinase-like Gene Family AT3G47570 41.111 3.99e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Bva03g00790 Pkinase 1.4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00790 - - ccaj:109813865 464.151