Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00779 ATGGCGAATAATCTGGACATGAGTCTCGACGACCTTATCGAAAAAAGTAAGAGATCCTCCGGCAATGGTGTTAACCACCGTGGCAGAGGCCGCAACTACGGCGGCCCTGGTCCGGACCGTCGTTTCGCCGATCGGAAGCCGTTCAGAACGACGCCGTACTCTAACCCGAAGCCAATGCAGCTTATGCAAACAATGTTTTTGGATGGAGGGTCTGGCGCTGAGGCAGGAACCAAGCTGTATATATCTAACTTGGACTATGGGGTTTCTAACGACGACCTTAAGCTGCTTTTCTCAGAGGTTGGTGAGCTGAAAAGACATTCCATTCATTATGACAAAAGTGGAAGATCAAAGGGAATAGCAGAAGTTGTCTTTATAAGGCAGTCTGATGCTATAGCAGCTATCAAGAGATACAACAATGTGAGACTTGATGGAAAGCCACTAAAGATTGAGCTTGTTGGAGTGAATGTGGTTAGTCCGATTGTCATGCCTCCTCCTGCAAACAGCAAACTGGGAAAACCACAGGGTGACTTTACAAGTGGACTAGGAAGGGGTAGAGGTGGTGGGTTCCGCAATGGCAATTGGCGTGGCCATCGTCCAACTGGCCGTAGACAAGAGAGGGCCTGCgttgaaaaagtaaaactgaCTGCTAAAGATCTTGATGCTGACTTGGAGAGGTACCGCTTGGCAGCTATCGACATAAACAAAGAGTG 710 0.4761 MANNLDMSLDDLIEKSKRSSGNGVNHRGRGRNYGGPGPDRRFADRKPFRTTPYSNPKPMQLMQTMFLDGGSGAEAGTKLYISNLDYGVSNDDLKLLFSEVGELKRHSIHYDKSGRSKGIAEVVFIRQSDAIAAIKRYNNVRLDGKPLKIELVGVNVVSPIVMPPPANSKLGKPQGDFTSGLGRGRGGGFRNGNWRGHRPTGRRQERACVEKVKLTAKDLDADLERYRLAAIDINKE 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00779 236 PANTHER THO COMPLEX SUBUNIT 4A-LIKE ISOFORM X1 1 233 - -
Bva03g00779 236 CDD RRM_THOC4 77 151 - -
Bva03g00779 236 SUPERFAMILY RNA-binding domain, RBD 25 151 IPR035979 GO:0003676
Bva03g00779 236 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 148 IPR000504 GO:0003723
Bva03g00779 236 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 154 IPR000504 GO:0003723
Bva03g00779 236 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 233 - -
Bva03g00779 236 MobiDBLite consensus disorder prediction 16 55 - -
Bva03g00779 236 Coils Coil 209 229 - -
Bva03g00779 236 SMART rrm1_1 78 150 IPR000504 GO:0003723
Bva03g00779 236 Pfam C-terminal duplication domain of Friend of PRMT1 173 228 IPR025715 -
Bva03g00779 236 Gene3D - 69 210 IPR012677 -
Bva03g00779 236 MobiDBLite consensus disorder prediction 179 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00779 Bva-Chr3 4682456 4685383 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00779 68 152 Eukaryotic Initiation Factors Gene Family AT2G23350 36.471 1.78e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00779 K12881 - jre:109015291 241.121