Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00738 ATGGACCCAACCTCGATCCCTCCGGCAACCAACACCGCCCCCTTCCCTCCCTTCGCCACTGCAGCTCCTCCTTCCTCCGCCGCCCCTTTCCCTCCGGTATCCTTCCCCTTTTCCGCCTCGGTTCCCACCCCCGCCCCCGCCGAAGCTAATAATCACGTGGCCCCTGCCGGCAACGCTGACCCGAGTGCTGCAGCTGCTGCTGGCCCTGGTCCGAGCCACCCTCCCTATGCTGATATGATATTTTCAGCAATCGAGGCTCTGAAAGAGAAAAACGGTTCCAGCAAGAGAGCTATCGCCAAGTACATAGAGCAAGTGTACCAAGACCTTCCCTCTACTCACTCCACCTTGTTGACTCACAACCTGCAGCGCTTGAAAGATAGTGGTCAACTTGTAATGGTCAAGAAATCTTACAAGCTCCCTAGATCTGATGCTTTTACTTCTACTCCCCCGAGGGGTCGTGGGCGTCCCCCTAAGCCCAAGCCGCAGCTTCAATCCCAACCGCAGCTTCAATCCCAGCCGCAGCTCCAAGTCCAGCCATTTCCTCAGCCTCTGCCCCAGAATTCGCCTGCGGCCAACGTGCAACAAAATGCTGTGTGGGCTGCTCTTGGACTTGGGGATGAGCCAGTTGAGGTGAAAAAGAGGGGCCCTGGTCGTCCCCGGAAGACTAGTGTTAGTGTAGAAGGTGCGATTGATCAAGCTGGGCAGCCCGTGCGTAGAGGGCGTCCACCTGGTTCCACAAATGGGCTGGGAAGACCGAGGAAAAGGCCTGGTCGTCCTCCTAAGCCCAAATCTGCGTTGGCTATCTCTAATGGGCTCAAGAGGCGGCCCGGTCGCCCGCCCAAAAACCAATCGCAACCAACGGTCATCCCCTTCGCTCCTCCCGTTCCCAGCGTACCTGCCGTACCTCAAGCGGAAACCGTATCCGCTGAATCAACTGTACCAACTGCTACCGTGCCCACGGTTACCATACCTGTTGTATCTCCAAGGCCTAGAGGACGGCCGAAGAAGAATGCCGCAGCAGTGCCAGCATATGGAGCTGTACCACAGGCTGTCGTTGGTGTTGGTCGTGGTAGGGGCCGAGGAAGGGGACGTGGGGTTTCGGCGGGTCGACCTCCGAATGTTGCCGCGAGGGCCAAAAATCCCGGTGCTAGACCCGTGGGTCGGCCAAAGAAGGGAACAACTGCTGCTGCCACTTCAGGAAACGCTGTGAATGAAGAACTTAGGCGGAAGCTTGAATATTTTCAATCTAAAGTCAAGGAATCTCTTGGTGTGATTAAGCCTCATTTCAACCATGAAAGTCCAGTCACAGCAATTGCAGCCATCCAAGAATTGGAGATACTGTCGACAATGGACCTTAATGCACCATTAGGAGATGAAGCACCACAACAGCAACGGCAAGAGCAACAATCGCCACAGCCACAGCAACACTTATTTGCACAACCACAGCAACTGTTCCAGCAACCGTCATTTGTACAACCACAGCAAGTGCCGCAGCAGCCGCAGTTTTATCAACAACAAATGCCCCAGGTACAGCTGCAGCCACAGCAACTGTTTCATCCGCAATCTTCAGGCCCGAGTTA 1580 0.5544 MDPTSIPPATNTAPFPPFATAAPPSSAAPFPPVSFPFSASVPTPAPAEANNHVAPAGNADPSAAAAAGPGPSHPPYADMIFSAIEALKEKNGSSKRAIAKYIEQVYQDLPSTHSTLLTHNLQRLKDSGQLVMVKKSYKLPRSDAFTSTPPRGRGRPPKPKPQLQSQPQLQSQPQLQVQPFPQPLPQNSPAANVQQNAVWAALGLGDEPVEVKKRGPGRPRKTSVSVEGAIDQAGQPVRRGRPPGSTNGLGRPRKRPGRPPKPKSALAISNGLKRRPGRPPKNQSQPTVIPFAPPVPSVPAVPQAETVSAESTVPTATVPTVTIPVVSPRPRGRPKKNAAAVPAYGAVPQAVVGVGRGRGRGRGRGVSAGRPPNVAARAKNPGARPVGRPKKGTTAAATSGNAVNEELRRKLEYFQSKVKESLGVIKPHFNHESPVTAIAAIQELEILSTMDLNAPLGDEAPQQQRQEQQSPQPQQHLFAQPQQLFQQPSFVQPQQVPQQPQFYQQQMPQVQLQPQQLFHPQSSGPS 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00738 526 MobiDBLite consensus disorder prediction 286 300 - -
Bva03g00738 526 MobiDBLite consensus disorder prediction 354 405 - -
Bva03g00738 526 SMART AT_hook_2 357 369 IPR017956 GO:0003677
Bva03g00738 526 SMART AT_hook_2 213 225 IPR017956 GO:0003677
Bva03g00738 526 SMART AT_hook_2 383 395 IPR017956 GO:0003677
Bva03g00738 526 SMART AT_hook_2 236 248 IPR017956 GO:0003677
Bva03g00738 526 SMART AT_hook_2 150 162 IPR017956 GO:0003677
Bva03g00738 526 SMART AT_hook_2 328 340 IPR017956 GO:0003677
Bva03g00738 526 SMART AT_hook_2 273 285 IPR017956 GO:0003677
Bva03g00738 526 PANTHER HISTONE H1 36 466 - -
Bva03g00738 526 CDD H15 73 140 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva03g00738 526 PRINTS Histone H5 signature 209 228 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bva03g00738 526 PRINTS Histone H5 signature 59 80 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bva03g00738 526 PRINTS Histone H5 signature 86 103 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bva03g00738 526 Coils Coil 84 104 - -
Bva03g00738 526 Pfam linker histone H1 and H5 family 73 135 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva03g00738 526 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 72 141 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva03g00738 526 PANTHER HISTONE H1-LIKE 36 466 - -
Bva03g00738 526 MobiDBLite consensus disorder prediction 459 526 - -
Bva03g00738 526 MobiDBLite consensus disorder prediction 9 27 - -
Bva03g00738 526 Gene3D - 70 149 IPR036388 -
Bva03g00738 526 MobiDBLite consensus disorder prediction 453 526 - -
Bva03g00738 526 MobiDBLite consensus disorder prediction 1 27 - -
Bva03g00738 526 MobiDBLite consensus disorder prediction 39 71 - -
Bva03g00738 526 SMART h15plus2 70 136 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva03g00738 526 MobiDBLite consensus disorder prediction 140 313 - -
Bva03g00738 526 PRINTS AT-hook-like domain signature 326 337 IPR017956 GO:0003677
Bva03g00738 526 PRINTS AT-hook-like domain signature 150 160 IPR017956 GO:0003677
Bva03g00738 526 PRINTS AT-hook-like domain signature 381 391 IPR017956 GO:0003677
Bva03g00738 526 SUPERFAMILY "Winged helix" DNA-binding domain 70 146 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00738 Bva-Chr3 4410777 4414540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00738 79 154 Single Myb Histone (SMH) Gene Family AT1G49950 38.158 1.77e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00738 - - aprc:113856313 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00738 03 4410777 4414540 Bva03g00738 03 4410777 4414540 ECH