Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00725 ATGGGTATCAAAGATCTTCTCAAATTCATGAAGCCGTATATCGAACCCGTTCATATCAAGATATACGCAGGGAAGCGGGTGGCTATTGATGCATATTCATGGCTTCACAAGGGAGCTTATTCATGTAGTATGGAGCTTTGTCTCAATTCTGATGGTGAAAAGAAATTGCGGTACATAGACTACTTTATGCATCGAATCAATCTGCTTCGCCACTATAACATAACCCCAGTTGTAGTTTTTGATGGTTGCAATCTTCCTTGCAAGGCAGCTACGGAGGAAGAAAGGCACAGaaAGAGAAATACTAATCTTGAATTGGCGATGGCCAAGCTTAAGGAAGGAAATCTCAGTGCAGCCACAGTGCTGTTCCAGAGAGCAGTAAGTATCACTCCCTTTATAGCACATCAACTGATTCAGGTTCTCAGGTTAGAGAACATTGAATTTGTTGTAGCTCCATATGAGGCAGATGCTCAGCTAGCATATTTGTCCAGCCTTGAAGCAGAAAAGGGTGGAATTGTAGCAGTGATCACAGAGGATAGTGATCTAATGGCATATGGTTGTCCAGCGATTGTCTTTAAGATGGACCGTCATGGGAATGGTGAAAGAATAGAGTTAGAGAAGGTTTTTAACGCTGAGACTTGTAAACCTTCATTTCGAAGATTTGATATGGAACTCTTCACAGGTATGTGCGTCTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGAATTGGGATCGCACGAGCTCATGGCTTAGTTTCCAAGTATCGAAGCTTAGAGCGTGCGTTATCTGctctaaaatatgaaaagggCGACCAAGTGCCTGAAGATTACTCTAAATCCTTCAAAGAGACAGTTGCAGTCTTCCATCATGCTCAAATATATGATGTCAATGCTAAGGCGCTCAAGCATATGAAGCCAATTCCGCCAGAACTTCTTCAGTCTCTTGACAGAAAGCTTGATTTCTTGGGACCAGAAATTCCCCCATCTTTAGTCACTGCGATAGCTGAAGGAAACATAAATCCATCAACTAAGGAAGCCTTTGATAAGCTTCAAGGTTCTGCACTTCCTTCAGACCCCACTGCCTTCCAGAGCACTGGTCAACTCCAGAAAGCTCAAGTTCCCCCACCATTGACGCAGGAGAGCTGCTTTCTGGTCTTCAGCTCCAATAATACCAGAGAAAGCAATACAGTGAAAAAGCAGAATAAAGTCTTCGATGAAGAACACTATTCGAATGAAGCATTGGCACTTCAGAAACTGATCACGCCAATGGAAACTCGTGGAAGAATTCCAAACACCAGAATCCCTGATGACACTCCATTAAAGGTTCCTGATAACAATCCATTCAGGATAAGAAAACCTATGATTTCTTTGGTTCAGAGAGACATTTATACTGAAAAAGATCATGTTTTAAGCCACGTGGAAAATCTTGACATGTGCCTGTCTCCAGAAAACTTCAAAGAAGTGGAATCCGAAAGTTTCtcaaggaaaaggaaatttcaaaacatttgCTCAGATCAATTAGAGGCCACTGATGTCCAAGTTTCAGGAATAACTGAAGTAGAAGACATTGATATATCAAGCATGGCTATGGAATCCCAAGAAAGTGTAAATTCTAAGACTACAAAAGGTGCTGTTTTGAACGGAAGAagtaaaagtgaaaagaaatccAAGAGAAGCaattttgagaaaacaaagagtaaaattagcagcatattaaatttcttttcacgAGTGTA 1736 0.3911 MGIKDLLKFMKPYIEPVHIKIYAGKRVAIDAYSWLHKGAYSCSMELCLNSDGEKKLRYIDYFMHRINLLRHYNITPVVVFDGCNLPCKAATEEERHRKRNTNLELAMAKLKEGNLSAATVLFQRAVSITPFIAHQLIQVLRLENIEFVVAPYEADAQLAYLSSLEAEKGGIVAVITEDSDLMAYGCPAIVFKMDRHGNGERIELEKVFNAETCKPSFRRFDMELFTGMCVLAGCDFLPSVPGIGIARAHGLVSKYRSLERALSALKYEKGDQVPEDYSKSFKETVAVFHHAQIYDVNAKALKHMKPIPPELLQSLDRKLDFLGPEIPPSLVTAIAEGNINPSTKEAFDKLQGSALPSDPTAFQSTGQLQKAQVPPPLTQESCFLVFSSNNTRESNTVKKQNKVFDEEHYSNEALALQKLITPMETRGRIPNTRIPDDTPLKVPDNNPFRIRKPMISLVQRDIYTEKDHVLSHVENLDMCLSPENFKEVESESFSRKRKFQNICSDQLEATDVQVSGITEVEDIDISSMAMESQESVNSKTTKGAVLNGRSKSEKKSKRSNFEKTKSKISSILNFFSRV 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00725 578 Gene3D - 218 291 - -
Bva03g00725 578 Gene3D - 1 213 - -
Bva03g00725 578 Pfam XPG N-terminal domain 1 100 IPR006085 GO:0004518
Bva03g00725 578 SMART xpgineu 141 213 IPR006086 GO:0004518
Bva03g00725 578 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 220 350 IPR036279 -
Bva03g00725 578 SMART xpgn3 1 102 IPR006085 GO:0004518
Bva03g00725 578 SMART HhH_4 222 255 IPR008918 GO:0003677|GO:0003824
Bva03g00725 578 MobiDBLite consensus disorder prediction 531 563 - -
Bva03g00725 578 ProSitePatterns XPG protein signature 2. 144 158 IPR019974 GO:0016788
Bva03g00725 578 CDD PIN_EXO1 1 209 IPR044752 GO:0046872
Bva03g00725 578 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Bva03g00725 578 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Bva03g00725 578 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Bva03g00725 578 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Bva03g00725 578 Pfam XPG I-region 144 235 IPR006086 GO:0004518
Bva03g00725 578 MobiDBLite consensus disorder prediction 548 563 - -
Bva03g00725 578 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 573 IPR006084 -
Bva03g00725 578 CDD H3TH_FEN1-like 223 295 - -
Bva03g00725 578 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 1 573 - -
Bva03g00725 578 MobiDBLite consensus disorder prediction 531 547 - -
Bva03g00725 578 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00725 Bva-Chr3 4333695 4338051 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00725 1 293 Core DNA Replication Machinery Family AT5G26680 28.339 1.24e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00725 K10746 - gmx:100817932 774.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00725 03 4333695 4338051 Bva03g00725 03 4333695 4338051 ECH