Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00697 ATGCCTGTAGCTACAGAAGCCTCAACAGTAGCAGAACACATCAAATGGAGAAGACCCAGAAACCAATTTAGCCAAGCCATTGCAGAAGCAGATCCAAACCCGCAAATCCCTTCCATAATCCAGTCCACTCGCTGCAAATCCACAATTTCCTCTCTGCTCCTCTCCACGTTCTCTAACAACAGCACAAATGAAACCATACAAGGGAATATCAATGGCGGTGGAcataacaacaaaaagaagaacaatTTCTCTGCGGCAAGTTTTAGAGGACTCGGATGCACTGCTGGCGCGTCGCAGCAGGTGTCGGTTCCGGCGGTGATTCGGACATCGGCGGATTGGCAGGGCAAGAaggcaagaaaaaagaaacacaaaaggAGTAATGCGAAGAACAATAACAGCAGCAAGACCGTTCAAGGCGTTCTTGATGGTTCAAACTCTGGGTCTGCTAATTTTCTCGATTTTCAAGATGTTTGGTGTGGCCCTGGAATTGGGATTTCAGCAGATGCTGCTGCCTCGGTCGATTGCGTCGTGGCCAGGAGGAATGCGTCTGCAAGAGGGAAGATTGACGTGGAGAAGATAAGCCACAGGGAGAGGGAGCGTCCCACTTACTTAGGGCGGCGCACCGTGAACCCAGAACCCATCTCGTTTTTGGATTCTGATCCTGACATTTTCGAAATGCGCCCTGCCTCTGACCCGTTTGGAACTGCTAGGCTCTTTCGCCATGTTCAACCTCCATCATCTGATAGTTTTCCCGAGATTGTGATGCTTCAAGGAAGTGTGCTAATGGGGGGAAGATTAGATTCGTATGATCGATTTAGAGACTGGAGACTTGATGTTGACAACATGACATATGAGCAACTGCTTGAGCTTGGTGAGAGAATTGGTCATGTGAACACTGGACTTAAAGAAGATGAAATAGGTTCCAATATTAGGAAAAGTAAGCCTCCAATACTCACTAATACATCAACACCTCAAGCGAAccaatttgacaaaaaatgcAGCATTTGTCAGGAAGAGTATGAAGCAGACGATGAACTGGGGAAGCTAAATTGTGGACATGGCTATCACGTACAATGTATAAGACAATGGCTTGCGCAGAAGAACTTCTGCCCGGTCTGCAAGGCAGAAGTTGTGGTGCGTCAACAAGTGCCACAATCCTG 1160 0.4534 MPVATEASTVAEHIKWRRPRNQFSQAIAEADPNPQIPSIIQSTRCKSTISSLLLSTFSNNSTNETIQGNINGGGHNNKKKNNFSAASFRGLGCTAGASQQVSVPAVIRTSADWQGKKARKKKHKRSNAKNNNSSKTVQGVLDGSNSGSANFLDFQDVWCGPGIGISADAAASVDCVVARRNASARGKIDVEKISHRERERPTYLGRRTVNPEPISFLDSDPDIFEMRPASDPFGTARLFRHVQPPSSDSFPEIVMLQGSVLMGGRLDSYDRFRDWRLDVDNMTYEQLLELGERIGHVNTGLKEDEIGSNIRKSKPPILTNTSTPQANQFDKKCSICQEEYEADDELGKLNCGHGYHVQCIRQWLAQKNFCPVCKAEVVVRQQVPQS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00697 386 MobiDBLite consensus disorder prediction 115 129 - -
Bva03g00697 386 MobiDBLite consensus disorder prediction 111 141 - -
Bva03g00697 386 CDD RING-H2_PA-TM-RING 333 374 - -
Bva03g00697 386 SMART ring_2 333 373 IPR001841 -
Bva03g00697 386 Pfam Ring finger domain 332 374 IPR001841 -
Bva03g00697 386 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 5 378 - -
Bva03g00697 386 SUPERFAMILY RING/U-box 332 380 - -
Bva03g00697 386 ProSiteProfiles Zinc finger RING-type profile. 333 374 IPR001841 -
Bva03g00697 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 379 IPR013083 -
Bva03g00697 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 5 378 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00697 Bva-Chr3 4164071 4168059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00697 1 285 C3H Transcription Factor Family AT1G73760 40.132 6.68e-48 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00697 - - gmx:100788837 472.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00842 04 5533644 5537439 Bva03g00697 03 4164071 4168059 ECH
Bva03g00697 03 4164071 4168059 Bva03g00697 03 4164071 4168059 ECH