Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00667 aTGGCGACGCCGTTGACGGGGTTGCAGCACTTGGACGGAGGTGGAGGTGTGGCGGTGCTGTCAAATTCTGTGAACAAGGTCGATTCTTCTTCGCCCTCGTCTTCTACCTCCAATGGTGGCTTGAAGTGCTCCAAATTGGACTCGTCGccaattttgatattttggttcTTCCATAAAGCGATTCGTAATGAGCTTGATGGCTTGCATCGATTGGCCATGGCATTTGCCACGGGAAATCGCTCTGATATTCAGCCGCTGCTTGAACGTTACCATTTCCTGAGATCGATTTATAGGCACCATTCCAATGCTGAAGATGAGGTCATATTTCCGGCTCTTGATATACGTGTCAAGAATGTAGCACAGACATATTCTCTTGAGCACAAGGGTGAAAGCAATCTTTTTGATCATCTATTTGAGTTGTTAAATTCTACCACCCAGAATGACGAAAGTTTTCCAAAGGAGTTAGCATCCTGCACAGGAGCTCTGCAGACATCTGTTAGTCAACACATGGCTAAGGAAGAGGAGCAGGTATTTCCACTGCTTATTGAGAAGTTTTCCCTAGAGGAACAAGCATCCTTAGTTTGGCAGTTTTTGTGTAGTATTCCTGTGAATATGATGGCTGAATTTCTTCCATGGCTTTCAACATCTATATCACCTGATGAATCTCAAGATCTGCGGACATGTTTACGCAAGATAGTGCCAGAGGAAAAGCTTCTTCAAAAGGTCTTTTTCACCTGGATGGAAGGGAATGGTCATTCTCAGGTTCATTGTTGCCGTAGCCCATTATCCCATCAGATTGAGAAAGTAAACTGTGCTTGTCAGTCCACAACTGGGAAAAGGAAACATGTTGAGTCTAGTGTAGATGCTTGTGATACCACTGGAACACATCCTATAGATGAAATTTTGCTCTGGCACaatgcaattaaaaaagagttgAGTGAGATAGCAGTGGAGACCAGAAAGATACAAAACTCTGGAGATTTTACTGATCTATCAGCTTTTAATGAAAGATTGCAATTTATTGCTGAAGTTTGCGTTTTTCATAGTATTGCTGAGGACAAGGTTATATTTCCCGCAGTAGATGGAGAACTTTCATTCTGTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTCAGGTGTTTGATTGAAGATATTCAAAGTGAAGGAGCAACATCTAATTCAGAAGctgaattttattcaaaattgtGCTCACATGCTGACCATATAATGGAAACCATACAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCTCTTGCTCGGAAGCACTTTAGCTTCAGAAGGCAACGCGAACTTCTGTACCAAAGCTTGTGCATGATGCCTCTAAAATTGATTGAACGTGTGCTGCCATGGTTGGTTGGATCATTAACTAAAGAAGAAGCTAAGATGTTTCTGCAGAACATGCAATTAGCAGCTCCAGCAAGAGATTCTGCGCTAGTCACACTCTTCTCTGGTTGGGCTTGCAAGGCTCGTAATGAGGGTTTGTGTTTGTCTTCAAGTGCATCAGGCTGTTGTCCTGCTCAAAGACTTACTGAGATTGAAGAAGATTTTGTTCAGTCATCCTGTGCATGTGCCTCTACATTATCTGCCAGAGATTGCTTAGTATCAGCTGAATCAGATGAGAACAAAAGATCAGTCAAGCGAAACATATTAGGGTCATGCAATAATGGAGATGTTTCTAAAACGTCAGTGACTGAAAGTATCCAGAAAAAATGTTGTAATGCTCGGTCTTGTTGTGTGCCAGGTTTAGGAGTAAGCAGTAATAATCTGGGGCTCAGTTCTCTATCTACTGCTAAGTCTTTACGCTCCTTGTCTTTCAGTTCTTCTGCCCCATCTCTTAATTCCAGTCTTTTCATGTGGGAAACAGATAACAGCTTGTTTGATGTTGGCTGTGCAGAAAGACCAATTGATACTATATTTAAATTCCATAAAGCTATACGAAAAGATTTGGAGTATTTGGATGTTGAATCTGGAAGGCTTAGTGATGGTGATGAGACAATTCTTCGGCAGTTTAGTGGGAGATTTCGTCTTTTGTGGGGTTTATATAGAGCTCATAGTAATGCTGAAGATGATATAGTATTTCCAGCACTGGAATCCAAAGAGGCACTTCATAACGTGAGTCACTCATACATGCTGGACCATAAGCAGgaggaaaaattatttgaagacATTTCCTGTGTTCTTTCTGAGCTTTCTGTCCTTCATGAAGGCTTGCAGATGACCCATAGGTCAGAGGATTTAACTCAAAGTAATTGTGAAATTTATGATGTCAATTGTAATGATAATATCAGAAAGTACAATGAGCTAGCTACTAAGCTTCAAGGTATGTGTAAATCCATAAGAGTGACCCTGGATCAGCATATTTTCCGGGAAGAGTGTGAGCTGTGGCCATTATTTGTTAGACATTTCACTGTGGAAGAACAAGACAAGATAGTTGGCCGAATAATTGGAACCACAGGTGCTGAAGTTCTCCAATCAATATTACCATGGGTAACTTCAGCACTTACTCAGGATGAACAGAACAAAATGATGGATACATGGAAGCAGGCAACCAAGAACACTATGTTCAATGAATGGCTTAATGAATGCTGGAAAGAGAGTCCTGCATCTATTTCACAGATAGAAACATCAGAGCATGGCACTTCTCAGCGAGGTGCTGAATATCAAGACAGCTTGGACCAGAATGATCAGACGTTCAAGCCAGGTTGGAAAGATATATTCCGGATGAATCAGAATGAACTTGAGTCAGAGATCCGAAAGGTTTATCGAGACTCAACTCTTGATCCAAGGAGGAAAGCATATCTTGTGCAGAATCTATTGACTAGTCGTTGGATAGCTGCACAGCAGAAGTTACCCAAAGCTATATCTGAGGAATCATCTAATGGTGAAGAAGTAGAAGGACGTACGCTGTCATTTCGGGACCCAGAGAAACAAGTATTTGGCTGTGAGCACTATAAGAGAAACTGTAAACTTCGGGCTGCGTGTTGTAGCAAGCTGTTTGCTTGTAGATTTTGCCATGACAATGTGAGCGATCACTCAATGGATAGAAAAGCAACGTCCGAAATGATGTGTATGCGCTGTCTGAATATACAGCCAGTTGGGCCTAAATGCATCACACCCTCATGTAACAGACTTTTAATGGCGAAGTACTATTGCAACATTTGCAAATTTTTTGACGATGAAAGAAATGTATATCATTGCCCATTTTGCAATTTATGCCGTGTGGGGAGAGGACTTGGGATTGATTATTTTCATTGCATGAAATGCAATTGTTGCCTGGGAATAAAATCAACATCTCACAAGTGCTTGGAGAAAAGTTTAGAAATGAACTGCCCAATTTGCTGTGACTTCCTTTTCACATCCAGTGCAACAGTCAGAGCTCTACCTTGTGGCCATTACATGCATTCAGCTTGTTTTCAGGCATACACCTGTAGTCACTACACATGCCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTCGGTATGCTTGATGCTTTGTTGGCTGCTGAGGAGCTTCCTGAAGAGTACAGGGACCGTTATCAGGACATACTTTGCAATGACTGTGAGCGGAAGGGCACTTCACGCTTCCACTGGTTATATCACAAGTGTGGATTTTGTGGTTCATATAATACCCGGGTTATCAAGGGTGAGACAACAGATTCCCCCTGCTCCTA 3713 0.4121 MATPLTGLQHLDGGGGVAVLSNSVNKVDSSSPSSSTSNGGLKCSKLDSSPILIFWFFHKAIRNELDGLHRLAMAFATGNRSDIQPLLERYHFLRSIYRHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSTTQNDESFPKELASCTGALQTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSTSISPDESQDLRTCLRKIVPEEKLLQKVFFTWMEGNGHSQVHCCRSPLSHQIEKVNCACQSTTGKRKHVESSVDACDTTGTHPIDEILLWHNAIKKELSEIAVETRKIQNSGDFTDLSAFNERLQFIAEVCVFHSIAEDKVIFPAVDGELSFCQEHAEEESQFNDFRCLIEDIQSEGATSNSEAEFYSKLCSHADHIMETIQRHFHNEEVQVLPLARKHFSFRRQRELLYQSLCMMPLKLIERVLPWLVGSLTKEEAKMFLQNMQLAAPARDSALVTLFSGWACKARNEGLCLSSSASGCCPAQRLTEIEEDFVQSSCACASTLSARDCLVSAESDENKRSVKRNILGSCNNGDVSKTSVTESIQKKCCNARSCCVPGLGVSSNNLGLSSLSTAKSLRSLSFSSSAPSLNSSLFMWETDNSLFDVGCAERPIDTIFKFHKAIRKDLEYLDVESGRLSDGDETILRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEKLFEDISCVLSELSVLHEGLQMTHRSEDLTQSNCEIYDVNCNDNIRKYNELATKLQGMCKSIRVTLDQHIFREECELWPLFVRHFTVEEQDKIVGRIIGTTGAEVLQSILPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECWKESPASISQIETSEHGTSQRGAEYQDSLDQNDQTFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLLTSRWIAAQQKLPKAISEESSNGEEVEGRTLSFRDPEKQVFGCEHYKRNCKLRAACCSKLFACRFCHDNVSDHSMDRKATSEMMCMRCLNIQPVGPKCITPSCNRLLMAKYYCNICKFFDDERNVYHCPFCNLCRVGRGLGIDYFHCMKCNCCLGIKSTSHKCLEKSLEMNCPICCDFLFTSSATVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRYQDILCNDCERKGTSRFHWLYHKCGFCGSYNTRVIKGETTDSPCS 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00667 1237 CDD RING-H2_Pirh2 1120 1163 - -
Bva03g00667 1237 PANTHER CHY ZINC FINGER PROTEIN 35 1236 - -
Bva03g00667 1237 Gene3D - 1192 1233 - -
Bva03g00667 1237 SUPERFAMILY Zinc hairpin stack 1058 1114 IPR037275 -
Bva03g00667 1237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1114 1165 IPR013083 -
Bva03g00667 1237 Gene3D nmb1532 protein domain like 49 199 - -
Bva03g00667 1237 Gene3D nmb1532 protein domain like 299 446 - -
Bva03g00667 1237 ProSiteProfiles Zinc finger RING-type profile. 1121 1163 IPR001841 -
Bva03g00667 1237 SUPERFAMILY CHY zinc finger-like 985 1048 IPR037274 GO:0008270
Bva03g00667 1237 Pfam Zinc-ribbon 1168 1225 IPR039512 -
Bva03g00667 1237 CDD Hr-like 299 428 - -
Bva03g00667 1237 CDD Hr-like 647 807 - -
Bva03g00667 1237 Gene3D nmb1532 protein domain like 641 883 - -
Bva03g00667 1237 SUPERFAMILY RING/U-box 1118 1173 - -
Bva03g00667 1237 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 35 1236 - -
Bva03g00667 1237 CDD Hr-like 57 179 - -
Bva03g00667 1237 Pfam Hemerythrin HHE cation binding domain 296 430 IPR012312 -
Bva03g00667 1237 Pfam Hemerythrin HHE cation binding domain 54 181 IPR012312 -
Bva03g00667 1237 Pfam Hemerythrin HHE cation binding domain 645 808 IPR012312 -
Bva03g00667 1237 SMART ring_2 1121 1162 IPR001841 -
Bva03g00667 1237 ProSiteProfiles Zinc finger CHY-type profile. 985 1054 IPR008913 GO:0008270
Bva03g00667 1237 Pfam CHY zinc finger 992 1067 IPR008913 GO:0008270
Bva03g00667 1237 Pfam Ring finger domain 1120 1162 IPR001841 -
Bva03g00667 1237 ProSiteProfiles Zinc finger CTCHY-type profile. 1057 1120 IPR017921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00667 Bva-Chr3 3988861 3999028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00667 1 1237 C2H2 Transcription Factor Family AT3G18290 68.232 0.0 1718
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00667 K16276 - gmx:100801725 2095.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00827 04 5447883 5456425 Bva03g00667 03 3988861 3999028 ECH
Bva03g00667 03 3988861 3999028 Bva03g00667 03 3988861 3999028 ECH