Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00649 ATGAAAGGAGCAAACGCTTTGGGGGCGAGAACAGCACGAGCCTGTGATAGCTGCCTCCGCAGAAGGGCACGTTGGTTTTGTGCTGCAGATGATGCTTTTCTTTGCCATGCCTGTGATACATTAGTTCACTCTGCAAATCAATTAGCCAGAAGACACGAAAGGGTTCGGCTTCAAACTGCTTCCTCTAAGCTCAGCTCCTCAGTGACCCCAAATAAGCTAACTGCACAATCATGGCACAGTGGCTTCACACGCAAGGCAAGAACCCCACGTCATAATAAGCACTTATTGGGGCAACAACACAAACATGAAgaacaacaagaagaagaacattTGCTTTTGAATAGCAGTCATAGTGTTCTTCGGGTTGTTCCTGAGCTTGCAAGTGAAGAGCCTGTGCTGGAGGAGACTGAGGAGCAGCTTCTATGTCGCGTGCCGGTTTTGGACCCTTTTGATGCAGGGATTTGCAGTTTATACAGTGAAGTAGGTGATGACAGATTGGACACCACCACCATGAAGGAAGAAACTTGTGATTTGGACAATTTATCTGAGTTTTTTCAATCAGATACGGACCTTGCAGAGTTTGCTGCTGATGTTGAGAGCTTGCTGGGAAGTGGGCTCGATGAGGATTCTGAAGTGAAAGATTCAGAATTGTTTAAttgtaaagaagaagaagaagatgtaGGTATATATTTGGGAGGGAGAGAGGAAAATACAATGGTAAAGGATGAACAGGTAGAAGCTGTTCCAACTTGTTATCATTTGGACTCAATTCTGGACATGGAGGGCTTAAGTTGGAATATTGAATCAGAATCATTAGATGATGTGCTGCAGGAAAAGGAGGATAAGGCGGTGGTGCCGGTAGCAGCGAAAGACGGCAATGGTGTTGATAAATTGGGAACAAAGAGGAAGATATTTTTGAGGCTTAACTATGAGGATGTCATTTCTGCTTGGGAAAGCCAGGGCTCTCCTTGGACAACAGGAAACCCACCTCATCAATTCATTTCTAGTGACTGCTGGTCACACTGCTTGGGTTCAAGTGGTACAGAAGTTCAGCAGTGCTATGGGGAAGTAGGAAGCTTAAGGGGACACCTAGATGTGGGTAGAGAAGCAAGAGTGTCAAGGTacagagagaagagaaggacACGTTTGTTTGCAAAGAAGATAAGGTATGAAGTGAGGAAATTGAACGCAGAGAAGAGACCAAGAATGAAGGGTCGATTTGTGAAGAGGAGTTCCTTTGTTGGAACTTCTGCATGCTTTTCCTTACCACTGACATCAACTACCTA 1286 0.43 MKGANALGARTARACDSCLRRRARWFCAADDAFLCHACDTLVHSANQLARRHERVRLQTASSKLSSSVTPNKLTAQSWHSGFTRKARTPRHNKHLLGQQHKHEEQQEEEHLLLNSSHSVLRVVPELASEEPVLEETEEQLLCRVPVLDPFDAGICSLYSEVGDDRLDTTTMKEETCDLDNLSEFFQSDTDLAEFAADVESLLGSGLDEDSEVKDSELFNCKEEEEDVGIYLGGREENTMVKDEQVEAVPTCYHLDSILDMEGLSWNIESESLDDVLQEKEDKAVVPVAAKDGNGVDKLGTKRKIFLRLNYEDVISAWESQGSPWTTGNPPHQFISSDCWSHCLGSSGTEVQQCYGEVGSLRGHLDVGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRSSFVGTSACFSLPLTSTT 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00649 428 CDD Bbox1_BBX-like 14 57 - -
Bva03g00649 428 Pfam B-box zinc finger 12 55 IPR000315 GO:0008270
Bva03g00649 428 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 2 416 - -
Bva03g00649 428 ProSiteProfiles Zinc finger B-box type profile. 10 57 IPR000315 GO:0008270
Bva03g00649 428 Pfam CCT motif 368 410 IPR010402 GO:0005515
Bva03g00649 428 SMART bboxneu5 10 57 IPR000315 GO:0008270
Bva03g00649 428 ProSiteProfiles CCT domain profile. 368 410 IPR010402 GO:0005515
Bva03g00649 428 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 2 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00649 Bva-Chr3 3897056 3899031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00649 4 410 C2C2-CO-like Transcription Factor Family AT1G25440 43.981 8.86e-94 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Bva03g00649 zf-B_box 5.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00649 - - gmx:100802113 443.736