Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00647 ATGCATTCTCTCAAATCATATCTCACTCgttcattttctcctttggATGGCTTTTCCTCTAACTCTGCCAGgttgtttctctctctgttcTCTAGTCTTTCTCTACCATCCCAAGcctcaaaagaaagaagttcCTTGTTTGATTACCTGAACACCAACTTCAAATTATCCAAAAGTCAATCCGCCTATGTTTCCAAACGTGTTTTAGCAGTCAGGTGCCCACAAAATCCCTTGTCTGTGTTAAAGTTCTTTCAACAAATTGGATTTTCTGAAGACCAAATTCAGTCTATTGTTCGTAATCATtcacaattaatattttcaaatattgagAAAACCCTAAAGCCAAAGATTGAGTTCTTTCAACGAATTGGTTTCGATGATTCTGAGCTGCCTAAGTTTATTTCCAAGAATCCAGATGTGTTGATTTGTAGTTTGAATAAAACATTGGTCCCCGCTGTGGAAGCAATTaggaaaattttgtataataataaagattttattcGAGTGTTGCACAGATCTGGTGGCCGGATACTCCCTAAGTACAAAAAAGTTTTACAGAGTGCTGCCTTCTTTGAGAATGTTGGGATTGTTGGCTCACAGCTTTCGATATTGATGAAACGGCAGACATGGGTTTTCACTGTAAATGAGTGTATGCTTAAAAACTTCATTTCACAGGCTGTAGACATGGGTTtccattcaaattcaaaaatgtTAGTCCATGCACTCCTTACAATCACTGGCTTAAAGATTGAAACACTAAGGAGAAAGCTGGAGTTTCTTCAGAGTTTTGGCTTTTCTAAAGATGAGAGCTTGAAAATGTTTAGAGGAGCTCCAAATTTGCCTAGAGTATCTGAGAAGAAGTTACGTTTTGGAATTGAGTTCTACCTGCACACGGCTATGTTGCCGAAGTCTGTCTTGGTTCAACAACCCGCAATTTTGATGTATAGCATGGAGGACAGGGTGATTCCTCGATACAGGGTTTTTCAACTGATACTatcaaagaatttatttaagagGGAAACAAAGTTTGCTGCTATGTTGGGTTATGGAGAGGAGGTGTTTCTGAAGAGGTATATTTTCCCCTTTGGAGACAATGCAGAGGAATTATTGGTAGCTTACAAGGGCCACTATCTGGAGGCTGCTTCTAAACAAAGTTCTGTTTTCCAGTCATCTTG 1175 0.3506 MHSLKSYLTRSFSPLDGFSSNSARLFLSLFSSLSLPSQASKERSSLFDYLNTNFKLSKSQSAYVSKRVLAVRCPQNPLSVLKFFQQIGFSEDQIQSIVRNHSQLIFSNIEKTLKPKIEFFQRIGFDDSELPKFISKNPDVLICSLNKTLVPAVEAIRKILYNNKDFIRVLHRSGGRILPKYKKVLQSAAFFENVGIVGSQLSILMKRQTWVFTVNECMLKNFISQAVDMGFHSNSKMLVHALLTITGLKIETLRRKLEFLQSFGFSKDESLKMFRGAPNLPRVSEKKLRFGIEFYLHTAMLPKSVLVQQPAILMYSMEDRVIPRYRVFQLILSKNLFKRETKFAAMLGYGEEVFLKRYIFPFGDNAEELLVAYKGHYLEAASKQSSVFQSS 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00647 391 PANTHER EMB|CAB62602.1 36 376 - -
Bva03g00647 391 Gene3D Transcription termination factor 3, mitochondrial 50 177 IPR038538 -
Bva03g00647 391 Gene3D Transcription termination factor 3, mitochondrial 178 361 IPR038538 -
Bva03g00647 391 Pfam mTERF 40 121 IPR003690 GO:0003690|GO:0006355
Bva03g00647 391 Pfam mTERF 249 354 IPR003690 GO:0003690|GO:0006355
Bva03g00647 391 Pfam mTERF 81 170 IPR003690 GO:0003690|GO:0006355
Bva03g00647 391 SMART mt_12 131 162 IPR003690 GO:0003690|GO:0006355
Bva03g00647 391 SMART mt_12 271 302 IPR003690 GO:0003690|GO:0006355
Bva03g00647 391 SMART mt_12 236 266 IPR003690 GO:0003690|GO:0006355
Bva03g00647 391 SMART mt_12 303 334 IPR003690 GO:0003690|GO:0006355
Bva03g00647 391 SMART mt_12 95 126 IPR003690 GO:0003690|GO:0006355
Bva03g00647 391 PANTHER CGI-12 PROTEIN-RELATED 36 376 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00647 Bva-Chr3 3886605 3889679 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Bva03g00647 mTERF 3.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00647 K15032 - qsu:111994342 325.479