Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00618 ATGGCGAATCGACTGaaggaagatgaaaaaaatgaaagaataattCGAGGTCTTCTCAAACTTCCGGAGAATCGAAGATGTATCAATTGCAACAGCTTGGGGACACAATATGTGTGTACAAATTTCTGGACATTTGTTTGCACAAACTGTAGTGGAATACACCGGGAATTCACACATCGTGTAAAATCAGTTTCAATGGCCAAATTTACTTCACAAGAAGTTAGTGCACTTCAGGAAGGGGGAAATAAGCGTGCAAAAGAAATCTATTTTAAAGATTGGGATGCACAGCGCCAGTCTTTCCCTGATAGCAGTGATGTTGACAGGCTCCGGGCATTTATTAAGCATGTTTATGTAGATAGAAGATTCAGCGGTGAGAGGACCTATGACAAACCACCAAGAGTTGATTCATATCAGGGAGGGTCTAAAAGTCCACCATATGAACATCAATATAGTGACAAGTCTAGTCCTGGTGGAAGAACTTATGATGAGAGAAGAAGTCCTGGATATGATCAGGAAAGTAGGCAATATGGTGATTACAGGAGAAGTCCTGGTCGTCCCCCCATAGTCACTGATTGGCGCCGTGAAGATAGATTTGGAGATCGTAGAATATCTGATGGAGGTTATAAATCAGAAGGGCAATCACCTGATCAAGTAAAAGATCTTGATTCTTCAAGTCCACCTGTGGTACGACCTGTTAGAGATATTTTGGGAGAAAATGTAGTACCTCTTCGGGTTAGTGAACCTCCTAAAGGGGGCAGCGGAAAGGCAGCTGATGGTTCTGCACTTACACAGAGAACTGCTTCTTCTAGTAGCTTGGCAACCAGCAATGGAAACCCAGTTGAAGTTAAGTTGGAGACTACCAAGAGcctaattgattttgatgctgAGCCTGAACCTCCAGTTACTCCAGCAATTCCTCAGACCCAACAGACTACTGTGGCTCAATCTCTTGTTCAGCCAGAAAATTCCAGTGGTGAAACCAACTGGGCTTCCTTTGATGTTGCCCCTGTGGCTAAAGCAAATCAAGGTCCTTTAAATGTTAGTCCACTAGAATCTGTGCTATCACAATTGTCGATGTCAGAACCTGCAGGGCATGTGCTAGCATCTGGTCCTACTTCTAATGCTTCTGGCGCCGCAAGTGTTAGCAGCTTCCCAACATTCCCACCAAGTGGTGCTTCAGTAACAACCCCTGGATTGACAACATTATCCCCTCTCAATGGTCCAGGCCAGTGGCATAGTATGCAGCCTCAGCAACCTTTGTTCCCTGCTACTGTCAGACAGCCTGCTGCTCAACAATTTACACCACCAGTAGGCGGAGCTTTGAATAATCAGCCTTGGAATGTGCCTAATGCTCCAACAACACAAGGACAGTCGAACATGCCAACACAACATACATCACACCTTGTCTCAAAGCCTGCCAATGAGGCTACCTCTGGTGCTGCTTCACAACCTTCTACTGTTGAAGTAAAACCAAGTGGAAGAAAAGAACTTCCTGAGGATCTTTTTACCCTAAAGTATCAATCTTTCCCTTCTCCAGCTCCAGGGTGGCAAATGGGTCCTTCCCATGGCATGGGTATCCAAATGCAATATAATATTGTGGCGCCTATGCCAAGTTTTCCACAGTCATCAAAGTCAACAAATCCATTTGATGTTAGCAGCGAACCACATCCAGTACAAGCCCCAACATTTCCTTCCATGTCATCATTACAAGGTACTTTGCCTAGTGTATCAGCTTCTTCAGGCCTGATGCATCCTTCAAGCTTGGTTAATCCATCACTTACTTGGATGCCACCCCAGTCATCAGCATATGGATATGTACTGCCCCAGCAGATACAAACTCACGCACCAGCAATGGCTTCAGGGGCATACATGGGACAACACATGCCGACTAACATGCCAATGCCAAGGCATCAAGAAATTGGGAGTTTTGGTACTGAGGGGGCTGCTTTTGGCCTCTCAAATCCAAATCAGCAGCTGACAGGTAGGTTTCCGACAACTGCTGCCCCAAATCCCTTTCCCGCGGGAAGGAATCCATTTGGGTG 2042 0.4476 MANRLKEDEKNERIIRGLLKLPENRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVSALQEGGNKRAKEIYFKDWDAQRQSFPDSSDVDRLRAFIKHVYVDRRFSGERTYDKPPRVDSYQGGSKSPPYEHQYSDKSSPGGRTYDERRSPGYDQESRQYGDYRRSPGRPPIVTDWRREDRFGDRRISDGGYKSEGQSPDQVKDLDSSSPPVVRPVRDILGENVVPLRVSEPPKGGSGKAADGSALTQRTASSSSLATSNGNPVEVKLETTKSLIDFDAEPEPPVTPAIPQTQQTTVAQSLVQPENSSGETNWASFDVAPVAKANQGPLNVSPLESVLSQLSMSEPAGHVLASGPTSNASGAASVSSFPTFPPSGASVTTPGLTTLSPLNGPGQWHSMQPQQPLFPATVRQPAAQQFTPPVGGALNNQPWNVPNAPTTQGQSNMPTQHTSHLVSKPANEATSGAASQPSTVEVKPSGRKELPEDLFTLKYQSFPSPAPGWQMGPSHGMGIQMQYNIVAPMPSFPQSSKSTNPFDVSSEPHPVQAPTFPSMSSLQGTLPSVSASSGLMHPSSLVNPSLTWMPPQSSAYGYVLPQQIQTHAPAMASGAYMGQHMPTNMPMPRHQEIGSFGTEGAAFGLSNPNQQLTGRFPTTAAPNPFPAGRNPFG 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00618 680 MobiDBLite consensus disorder prediction 390 416 - -
Bva03g00618 680 CDD ArfGap_AGFG 12 122 - -
Bva03g00618 680 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Bva03g00618 680 MobiDBLite consensus disorder prediction 125 280 - -
Bva03g00618 680 MobiDBLite consensus disorder prediction 157 179 - -
Bva03g00618 680 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Bva03g00618 680 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Bva03g00618 680 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Bva03g00618 680 MobiDBLite consensus disorder prediction 433 489 - -
Bva03g00618 680 MobiDBLite consensus disorder prediction 259 280 - -
Bva03g00618 680 MobiDBLite consensus disorder prediction 433 494 - -
Bva03g00618 680 PANTHER ARFGAP/RECO-RELATED 1 680 IPR044820 GO:0005096
Bva03g00618 680 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Bva03g00618 680 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Bva03g00618 680 MobiDBLite consensus disorder prediction 309 328 - -
Bva03g00618 680 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Bva03g00618 680 MobiDBLite consensus disorder prediction 142 156 - -
Bva03g00618 680 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Bva03g00618 680 MobiDBLite consensus disorder prediction 187 207 - -
Bva03g00618 680 PANTHER ARF GTPASE ACTIVATOR 1 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00618 Bva-Chr3 3649404 3656908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00618 12 146 C2H2 Transcription Factor Family AT4G05330 33.333 7.99e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00618 - - gmx:102669541 914.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00618 03 3649404 3656908 Bva10g00313 10 3897958 3903787 ECH
Bva03g00618 03 3649404 3656908 Bva03g00618 03 3649404 3656908 ECH