Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00603 ATGGAGCAGAACAACGTCATCGCACCGTTCGTTATAAAGACTTATCAGATGGTCAACGATCCCACCACTGATAATCTTATCGTCTGGGGTGGAGCCAGTAACAGCTTCATCGTCGTCGACCCCTTAGTTTTCTCTCAGCGAATGTTACCTGCCTATTTCAAGCACAACAACTTCTCAAGCTTCGTTCGTCAGCTCAACACCTATGGGTTCAGAAAGGTTGATCCAGATCGGTGGGAGTTCGCGAACGAGTGGTTTCTTCAAGGGCAGAAGCATTTGTTGAAGAATATTGTGAGGAGGAAGCACGTACAGAGTAGCAGGAATTCCAGTTCGTATTTTCAGGGGAAGCACGAGGAATTGGACGAGGAAGCCATAATGATGGAGATAGCGAGGTTGAAGGAAGAGCAGAAGGCGATGGAGCAAGAGCTTCAAGGGATGAATAGGCGTTTAGAGGCTACAGAGAGACGACCGCAGCAAATGATGGCCTTTCTTTGCAAAGTTGCCGACGACCCAGATGTTCTTTCTCGGATATTAGTCGAGAGAGACAAGAGGCGGTTGCCTGGGGAGAAGAAGAGGCGCTTCTTATCCCCGCCAACCACTTCCTCCTCCTTTGATGACGAAGAACCAGCTGTGCTTGGTGGTCTAATCTCTTCGTCGTCTCCGGAGACTGGTTTTGAAGTTGACAATTTCTACCAATCATCACCCTCCGACGACACAGTCGCCGCCGGTCATATCATGCCCGTCCCCGCTTGTTGGAGTGATAGGTATGGTATAATGGGTAGGCATCGGACGAGTGGTCAAGAGGCTTATAATTGCGCCGCAATTCCCACTCCCTTACCGGCGGTGTCGACGCCTCTGGGATGCGAAAATACTACCAGTAAGGGACAAGTAACCTATTTTACAGAAATGGCGGCGGAGACGGGGAGCAGTCCCCTGCCGCCTTATCCATTCTCGTTGTTGGAGGGTGGctttta 971 0.5026 MEQNNVIAPFVIKTYQMVNDPTTDNLIVWGGASNSFIVVDPLVFSQRMLPAYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLQGQKHLLKNIVRRKHVQSSRNSSSYFQGKHEELDEEAIMMEIARLKEEQKAMEQELQGMNRRLEATERRPQQMMAFLCKVADDPDVLSRILVERDKRRLPGEKKRRFLSPPTTSSSFDDEEPAVLGGLISSSSPETGFEVDNFYQSSPSDDTVAAGHIMPVPACWSDRYGIMGRHRTSGQEAYNCAAIPTPLPAVSTPLGCENTTSKGQVTYFTEMAAETGSSPLPPYPFSLLEGGF 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00603 323 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva03g00603 323 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 317 IPR027725 -
Bva03g00603 323 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva03g00603 323 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva03g00603 323 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva03g00603 323 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva03g00603 323 MobiDBLite consensus disorder prediction 188 208 - -
Bva03g00603 323 Coils Coil 121 155 - -
Bva03g00603 323 PANTHER HEAT STRESS TRANSCRIPTION FACTOR C-1 8 317 - -
Bva03g00603 323 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva03g00603 323 Gene3D - 2 100 IPR036388 -
Bva03g00603 323 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00603 Bva-Chr3 3536000 3537229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00603 6 323 HSF AT3G24520 47.590 1.15e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Bva03g00603 HSF_DNA-bind 2.2e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00603 K09419 - jre:108979361 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00603 03 3536000 3537229 Bva03g00603 03 3536000 3537229 ECH