Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00570 ATGGAGCGGATCGTTGGCGGCAAGTACAAGCTCGGCCGCAAGATTGGAAGCGGATCCTTCGGTGAAATTTTCCTTGCCACGCATATTGATAGCTTCGAGATCGTTGCTGTAAAGATTGAGAACACTAAAACAAAGCATCCACAGCTGCTTTATGAGGcaaaattgtataatattctTCAAGGAGGAAGTGGTATTCCTAGCATAAAATGGTCTGGCGTAGATGGGGAGGACAATGTGCTTGTTCTTGATTTGCTGGGACCAAGTCTTGAGGATCTCTTTGTGTATTGTGGAAGAAAGTTTTCATTGAAGACAGTATTAATGCTGGCTGATCAAATGATCACCAGAATAGAATATGTGCATTCTAAGGGATTTTTACATAGAGATATAAAACctgataattttcttatggGACTTGGGCGGAAGGCTAACCAGGTTTACATAATTGATTTTGGGCTTGCAAAAAGATATCGGGACTCCACAACCAACCGCCATATCCCTTACAGggagaacaaaaatttaacagGGACTGCACGTTATGCAAGTTGCAATACCCATCTTGGGATTGAGCAAAGCCGACGGGATGATTTGGAGTCATTAGGATATGTGCTTCTGTACTTCCTAAGAGGAAGCCTTCCTTGGCAAGGTCTAAAAGCTGCAACAAAGAAGCAAAAGTATGATAAAATATGTGAGAAGAAACTATCAACTCCTATTGAGGTACTATGCAAGTCTCATCCTGTGGAATTTGCTTCATACTTCCATTACTGCCACTCTCTAACTTTTGATCAGCGACCTGATTATGGATTCTTGAAGCGTCTATTTCGTGACCTATTTTCTCGAGAAGGTTATGAATTTGATTATGTATTTGATTGGACCATCCTAAAGTACCAGCAGGCACAAAAGAACAGAGTTCAGCCTCGCACATCTCAGCCTGTTCCTGGAGCAAGCAGCAGTCGTGCAGCGGCAATGGATGTTGACACCCATCAAGATGTTTCAGAGCGCATTAGGTCAGGCAATGCAAATGGATCTGGTGTAAAAATGCAGTTCAAATCACCAGTGGGCAAAAATTTGACTTCTGATAATCCTCTTGATAAGAATATTTTTGGAGAAGCAAATATGCCCTCTACATCTTATGCACTTGCCAGTACCTCAAAGAGGAATTCTTTAAAGCCTGGCTTCGCATATCTTCTGCTAAATAAATGTCCAATATGCCTTATCATACGTGAAGCTGCTAATGTATTGGGCTCCTCCTTTAAGGATAACAAGTACAATCTGGCTTGTACAAGGACTAGTTGGTTTTATTACTGTCTAGTTCAAGGGCAATTTCATCTTCCAACCAAAATTGCCTG 1346 0.4027 MERIVGGKYKLGRKIGSGSFGEIFLATHIDSFEIVAVKIENTKTKHPQLLYEAKLYNILQGGSGIPSIKWSGVDGEDNVLVLDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICEKKLSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFSREGYEFDYVFDWTILKYQQAQKNRVQPRTSPVPGASSSRAAAMDVDTHQADVSERIRSGNANGSGVKMQFKSPVGKNLTSDNPLDKNIFGEANMPSTSYALASTSKRNSLKPGFAYLLLNKCPICLIIREAANVLGSSFKDNKYNLACTRTSWFYYCLVQGQFHLPTKIA 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00570 448 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva03g00570 448 PANTHER CASEIN KINASE-RELATED 1 390 - -
Bva03g00570 448 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva03g00570 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Bva03g00570 448 Gene3D Transferase(Phosphotransferase) domain 1 1 340 - -
Bva03g00570 448 PANTHER CASEIN KINASE 1-LIKE PROTEIN 3 1 390 - -
Bva03g00570 448 SMART serkin_6 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva03g00570 448 MobiDBLite consensus disorder prediction 301 359 - -
Bva03g00570 448 MobiDBLite consensus disorder prediction 332 359 - -
Bva03g00570 448 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Bva03g00570 448 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Bva03g00570 448 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00570 Bva-Chr3 3320192 3325930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00570 3 213 Miscellaneous Gene Families AT3G23000 30.000 2.37e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Bva03g00570 Pkinase 4.7e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00570 K08960 - gmx:100800342 725.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00570 03 3320192 3325930 Bva03g00570 03 3320192 3325930 BWGD
Bva03g00570 03 3320192 3325930 Bva03g00570 03 3320192 3325930 ECH