Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00567 ATGAATCGATGGGGTTTTTGCCTTTTGGTTCTCTATGCTATATTCTTCAGGTTTTGCTGCAAAGCACAGCCACCAGAAGCTTCAGATCCAGAAAATGGCATGTCTAATTTTCAACCAAGCCTTGCTGTTGTCATAGGAATTCTGTGTCTCATGTTTTCACTTACATTCTTTATTCTCATGTATGCAAAATTCTGTCACCGGAGAGCTTCGGTTCATGGAGACCCAGAAATTCACCCTGCACGTATAAGTTCAAGATCAAGATTTTCAGGAATTGATAAAACTGTCATAGAATCTCTTCCCTTCTTTAGATTTTCTTCTCTCAGAGGCTCAAAAGAAGGGCTTGAGTGTGCGGTATGCCTATCCAAATTTGAAGATGTTGAAATCCTCAGGATGCTGCCTAAGTGCAAGCATGCCTTTCATATTAATTGCATTGATCATTGGCTTGAAAAGCACTCTAGCTGCCCTCTTTGCAGGCGCAGGGTCAATCCTGATGACCAAACCATTTTTGCAAATTCAAATAGCATGAGACTCCTAACTAACCAGCCAGAGCTGGGTGAGGAGTCCAACATAGAGCTCTTTGttgagagagaggaagaacATCATGGGTCATCAAGGTTCAGTATTGGAAGCAGCTTtaggaaaattgaaaagggtATTAAGGAAGAAGAATTCCCAATTCAGAAAGAAGCACAAGACAGCgatggtgatgatgatgataaggTATATCATAAGCACAATCATAAGATTATAGTATCTGATGTTGTGTTCAAGAATCGGTGGAGCAACGTGAGCTCATCGGACCTCATGTTCTTAAAGTCAGAGATGCTTAGTTCTATGTCAAGCAGAAGATTCAATTGGGAATCGCAAATTGAGCAGGTGCCAACAGCAAGGGCAATAGAAAATGAGGAAATTATAAACATCAAGGAGGAGATGGAGAGGAAAATTTCCATTGAGAGCAAAGTTGGTGTACTTAACAAAATCAATACAGCTTCAGATATAGGTCCTTCTTATACGTCAGATTCTGCAGGAAATTCAACCCAAACATCAAAGTATGTGAATCCAGGTGAGAAAAGATCTATGTCTGAAATCACTGCTGTCTCCAGATATGGAGATTGGGGCATGAAAGCAATGTTCTTTAGAGATTCCTCTTTGCTTGAAAACAatgtgaaagaagaaagagtaaGGCAACTTTGGCTGCCAATTGCCAGAAGAACAGTTAAATGGTTTGTCAATAGAGAAAGAAGGTCTCAGAATAAACAGCAGCCATTAGATGTATA 1277 0.3782 MNRWGFCLLVLYAIFFRFCCKAQPPEASDPENGMSNFQPSLAVVIGILCLMFSLTFFILMYAKFCHRRASVHGDPEIHPARISSRSRFSGIDKTVIESLPFFRFSSLRGSKEGLECAVCLSKFEDVEILRMLPKCKHAFHINCIDHWLEKHSSCPLCRRRVNPDDQTIFANSNSMRLLTNQPELGEESNIELFVEREEEHHGSSRFSIGSSFRKIEKGIKEEEFPIQKEAQDSDGDDDDKVYHKHNHKIIVSDVVFKNRWSNVSSSDLMFLKSEMLSSMSSRRFNWESQIEQVPTARAIENEEIINIKEEMERKISIESKVGVLNKINTASDIGPSYTSDSAGNSTQTSKYVNPGEKRSMSEITAVSRYGDWGMKAMFFRDSSLLENNVKEERVRQLWLPIARRTVKWFVNRERRSQNKQQPLDV 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00567 425 Pfam Ring finger domain 115 158 IPR001841 -
Bva03g00567 425 SUPERFAMILY RING/U-box 95 166 - -
Bva03g00567 425 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Bva03g00567 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 167 IPR013083 -
Bva03g00567 425 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 420 - -
Bva03g00567 425 SMART ring_2 116 157 IPR001841 -
Bva03g00567 425 MobiDBLite consensus disorder prediction 334 357 - -
Bva03g00567 425 MobiDBLite consensus disorder prediction 334 355 - -
Bva03g00567 425 CDD RING-H2_PA-TM-RING 115 158 - -
Bva03g00567 425 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00567 Bva-Chr3 3305025 3307281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00567 11 425 C3H Transcription Factor Family AT4G28890 47.778 3.82e-115 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00567 K10664 - gmx:100803207 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00567 03 3305025 3307281 Bva03g00567 03 3305025 3307281 ECH