Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00561 ATGCCTATGGCTGAGCTACCAAGCTCAGAAGCAGAGACAACTAGTGCCAGCTGCTTCCCACAGTCCCCGTCTTCGCCATCATCATCTGGGTCTGGATTATCTCAGTCAGTGCCTAACCATGCTTCTAAAAGAGAACCAGAACTGGAACAGAGGAAGGCCAAGCGAGCTAGAGATAGCAACAAGCATCCGGCTTACAGAGGAGTCCGAATGCGGACATGGGGCAAGTGGGTATCCGAAATCCGCGAACCCCGCAAGAAGAATAGGATCTGGCTTGGCACCTTCGCCACGCCAGAGATGGCAGCTCGTGCCCATGACGTGGCCGCACTCAGTATTAAAGGCTCCTCGGCCATGCTCAACTTCCCCGAGCTAGCGGGTTCTCTGCCCCGACCCGCTTCTAACTCGCCACGCGATGTTCAAGCTGCCGCCGCAAAAGCCGCTGCAATGGAAATATTTAACCCCGCAACGACGTCTTCGCCGTCACTGTGTACTTCTTCTTCGTCCCCGTCTCCTTCATCTTCGTCATCGTCGTTGTCCTTGTCCCTATCGCAGTCTTCGTCTACTTCGTCATTGGCAATATCTTGCTCCGATGACCCGTCGACCCCAGAAGAACTCGGTGAGATAGTCGAGCTGCCGGCTCTCGGAACCAGTTTCGAATCGCCCGACCCGAGTAACGATTTCGTGTTCGTTGACCCGGTAGATGGGTGGCTCTATCCTTACCCGTGGTATCACACCATTTACGATGACAAGGATTGTGGTTTCTATCTCCCTGGGGATCAGATATCTATGCAAGAAGCAGAGAGTTTGATTCTTTGTGGCTTTGAAGATTCATTATGGCAACATTA 842 0.5297 MPMAELPSSEAETTSASCFPQSPSSPSSSGSGLSQSVPNHASKREPELEQRKAKRARDSNKHPAYRGVRMRTWGKWVSEIREPRKKNRIWLGTFATPEMAARAHDVAALSIKGSSAMLNFPELAGSLPRPASNSPRDVQAAAAKAAAMEIFNPATTSSPSLCTSSSSPSPSSSSSSLSLSLSQSSSTSSLAISCSDDPSTPEELGEIVELPALGTSFESPDPSNDFVFVDPVDGWLYPYPWYHTIYDDKDCGFYLPGDQISMQEAESLILCGFEDSLWQH 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00561 280 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Bva03g00561 280 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 279 - -
Bva03g00561 280 MobiDBLite consensus disorder prediction 8 41 - -
Bva03g00561 280 MobiDBLite consensus disorder prediction 42 65 - -
Bva03g00561 280 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 15 279 - -
Bva03g00561 280 CDD AP2 65 123 IPR001471 GO:0003700|GO:0006355
Bva03g00561 280 SUPERFAMILY DNA-binding domain 64 122 IPR016177 GO:0003677
Bva03g00561 280 MobiDBLite consensus disorder prediction 1 68 - -
Bva03g00561 280 MobiDBLite consensus disorder prediction 157 180 - -
Bva03g00561 280 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Bva03g00561 280 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Bva03g00561 280 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Bva03g00561 280 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Bva03g00561 280 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00561 Bva-Chr3 3276815 3278071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00561 37 253 AP2-EREBP Transcription Factor Family AT5G11590 54.911 7.31e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva03g00561 AP2 2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00561 K09286 - jre:108986620 276.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00561 03 3276815 3278071 Bva03g00561 03 3276815 3278071 BWGD
Bva03g00561 03 3276815 3278071 Bva03g00561 03 3276815 3278071 ECH