Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00548 ATGGGTTCCCCagaaaagaagggagaaatgcaaagaaaagagggagCTTCTTCTATAGGCATAATTTTCAGATATGCTGATGGGATTGATCTTGTTCTCATGTTAATGGGTGCTTTGGGGGCCATAGGAGATGGCATGTCCACAAATGTTTTGCTCTTATTTGCTAGCCGTATCATGAACAGCTTGGGTTACGGTAATACTAAAAACACCCACTTACAAAACAGTTCTGGGAATTTCATGTCTGAGGTTGAAAAGTGCAGTTTATATTTTGTGTACTTGGGATTGGCAGCCATGGTGGTGGCCTTCATGGAAGGGTATTGCTGGAGCAAAACGAGCGAGAGGCAGGTGATGAGAATTCGTTACAAGTATTTGGAATCTGTCCTCAGGCAAGAAGTGGGTTTCTTTGATTCCCAAGAAGCAACTACTTCTCAAATTATCAATAGCATATCAAAGGACACTTCTCTCATCCAAGAAGTTTTAAGTGAAAagGTGCCCCTATTTTTGATGCATTCATCATCATTCATCTCAGGGATTATATTCTCTGCGTTCTTTTCATGGAGACTAGCTTTAGTAGCATTGCCAACACTTGTTTTTCTCATCATTCCTGGAATGCTCTATGGCAAGTACCTTACTATTCTGTCAAAGAAGTCCTATAAAGAGTATGGCAAAGCAAACACCATTGTAGAGCAGGCTCTAAGCTCTATTAAAACCGTGTATTCGTTCACGGCCGAGAAAAGAATCATGGAAAGATATTCAGCCATACTCGATAGAACTTCAAGGCTTGGAATCAAACAAGGCATAGCCAAGGGTTTGGCTGTAGGAAGCACAGGGCTTTCTTTCGCAATATGGGCTTTTCTTGCTTGGTACGGAAGTCGTTTGGTCATGTACAAAGGTGAAAGCGGAGGAAGGATCTATGCAGCAGGAATTGCCTTCATAATGAGTGGACTGTCCCTCGGAGTGGCACTTCCTGACCTGAAATACTTCACTGAAGCTTCTGTTGCTGCTAGAAGAATATTTGACATGATTGACCGGACACCATTGATTGATGGTGAAGACACAAAAGGACTTGTGTTAGAGAGAATTAGTGGGCAACTAGAATTTGAGCATGTGAAATTCACATACCCTTCTCGCCCAGACATAGTTGTGCTCAAAGATTTCAATCTAAAAGTGGAAGCAGGGAAAACTGTTGCTATTGTTGGTGCAAGTGGAAGTGGTAAATCCACTGCAATAGCATTAGTGCAACGATTTTACGATGCAGATGAAGGTGTTATAAGGGTGGATGCTGTGGACATAAAAAGCCTACAGCTAAAATGGTTAAGAGGGAAAATGGGGCTTGTGAGTCAGGAACATGCATTGTTTGGGACATCTATAAAGGAGAATATCATGTTTGGGAAGCCTGATGCCACAATGGAAGAAGTAGTTGCTGCAGCCACTGCTGCCAATGCTCATAACTTCATAAGGCAACTACCTCAGGGTTATGAAACCAAGATTGGTGAAAGAGGGGCACTTCTATCTGGTGGACAAAAGCAGAGAATAGCCATTGCAAGAGCCATTATAAAAAATCCTATAGTTCTTCTACTTGATGAAGCAACTAGTGCTCTTGACTCTGAATCAGAATCACTGGTCCAGAATGCCCTTGATCAGGCCTCCATGGGAAGAACAACACTGGTTGTTGCCCACAAGTTATCAACTATCCGAAATGCAGACCTTATAGCAGTTGTCAACGGTGGCTGCGTTACTGAAATTGGTACCCACAATGAACTCATCAACCGTCCAAATGGCCACTATGCAAAACTAGCAAAACTGCAAAGACAGTTCAGCTGTGATGATCAAGAGCAAAATCCAGAACTGGGTATTCTTTCAGTAGCAAGAAGCAGTGCAGGTCGACTAAGCACTGGCAGATCAAGCCCAGCTATATTTCCAAAGTCACCATTACCTGATGATGTTACTCCACCTCCAGTGTCTCACCATTCACCTTCTTTTCCTCGGCTTCTCTCTCTAAATACTCCTGAATGGAAACGGGGTCTAATTGGAAGCATCTCTGCTATAGCCTTTGGTTCAATTCAACCCACATATGCCTTAACAATTGGGGGTATGATTTCAGCATTTTTTGCTGACAGCCATCGGGAAATGCATCAAAGAATCAGGACTTatgctttaattttctcttcgtTATCCCTTGCTTCTATTATTCTCAATCTCTTCCAACACTATAACTTCGCTTATATGGGTGAGAAGTTAACGAAAAGGGTGAGACTGCACATGCTAGAGAAGATCTTAACCTTTGAAACTGCTTGGTTTGATGAGGAACAGAATTCCAGTGGAGCTTTATGCTCAAGGTTAAGCAATGAGGCTTCCATGgtcaagtcccttgttgcagACCGTGTCTCTTTATTAGTTCAAACCACTTCTGCAGtcacaattgcaatgatcatGGGCCTTGTTGTGGCTTGGAAGCTAGCTCTTGTAATGATAGCAGTACAGCCACTCACAATACTTTGCTTTTATACGCGAAAAGTGTTGCTCTCTACACTTACAACCAATTTTGTCAAGGCTCAAAATGATAGCACCCAAATTGCAGTGGAAGCAGTGTATAATCACAGAATTGTAACTTCATTTGGAAGCATCAGAAAAGTTCTACAAGTATTTGATGAGGCTCAGGAGGCACCAAGAAAGGAAGCAAGGAAGAAGTCATGGCTAGCTGGTATAGGAATGGGTTCTGCCCAGTGCCTAACTTTCATGTCATGGGCTTTGGATTTCTGGTATGGTGGCACATTGGTAGAAAAAGGAGAGATATCAGCAGGGGCTGTGTTCAAGACATTTTTCATATTGGTGAGCACTGGTAAGGTCATAGCCGAGGCTGGAAGCATGACTTCTGATCTTGCCAAGAGCTCAACTGCTATAGCATCtgtttttgaaattcttgaCAGAAAATCATTGATTCCTAATCCTAAGGGTGGAGATGGCAGCAGTGGATTGAAGTTGGAAAAGATTAGTGGGAAGATAGAGTTGAAGAATGTTGATTTTGCTTATCCTAGCAGGTCAGAGAACCTAATACTGCGCAAGTTCAGCTTGGAGGTGAAGGCAGGAAGTAGCATTGGACTGGTTGGGAAAAGTGGGTGTGGAAAATCAACAGTAATTGCTTTAATCCAAAGATTCTATGATGTTGAGAGAGGATCAGTGAAAGTGGATGGCATAGACATGAGGGAATTGGACATTCATTGGTACAGGCAGCAGACAGCACTAGTTAGCCAAGAGCCAGTAATATACTCCGGCACCATACGTGACAACATTTTGTTTGGGAAGCAAGACGCAACTGAGAATGAAGTGGTGGAGGCTGCTAGAGCTGCAAATGCTCATGAATTCATCTCATCTCTCAAAGATGGGTATGATACAGAATGTGGGGAAAGAGGTGTGCAATTGTCAGGGGGACAAAAGCAGAGAATAGCAATTGCAAGAGCCATAATTCGGAACCCAAAGATACTATTACTAGATGAAGCAACGAGTGCTCTGGATGTGCAATCAGAACAAGTTGTGCAAGAAGCACTTGATAGAATCATGGTGGGAAGAACTACAATTGTGGTGGCACATAGGCTCAACACCATCAAAAACCTTCATTCAATTGCCTATGTGGCCGATGGCAAAGTTGTGGAGCAGGGAAGCTATGCCCACCTTAAGCACATCAAAGGTGCTTTCTTCAACCTCGCCATCCGCCAACAAACTTA 3725 0.4177 MGSPEKKGEMQRKEGASSIGIIFRYADGIDLVLMLMGALGAIGDGMSTNVLLLFASRIMNSLGYGNTKNTHLQNSSGNFMSEVEKCSLYFVYLGLAAMVVAFMEGYCWSKTSERQVMRIRYKYLESVLRQEVGFFDSQEATTSQIINSISKDTSLIQEVLSEKVPLFLMHSSSFISGIIFSAFFSWRLALVALPTLVFLIIPGMLYGKYLTILSKKSYKEYGKANTIVEQALSSIKTVYSFTAEKRIMERYSAILDRTSRLGIKQGIAKGLAVGSTGLSFAIWAFLAWYGSRLVMYKGESGGRIYAAGIAFIMSGLSLGVALPDLKYFTEASVAARRIFDMIDRTPLIDGEDTKGLVLERISGQLEFEHVKFTYPSRPDIVVLKDFNLKVEAGKTVAIVGASGSGKSTAIALVQRFYDADEGVIRVDAVDIKSLQLKWLRGKMGLVSQEHALFGTSIKENIMFGKPDATMEEVVAAATAANAHNFIRQLPQGYETKIGERGALLSGGQKQRIAIARAIIKNPIVLLLDEATSALDSESESLVQNALDQASMGRTTLVVAHKLSTIRNADLIAVVNGGCVTEIGTHNELINRPNGHYAKLAKLQRQFSCDDQEQNPELGILSVARSSAGRLSTGRSSPAIFPKSPLPDDVTPPPVSHHSPSFPRLLSLNTPEWKRGLIGSISAIAFGSIQPTYALTIGGMISAFFADSHREMHQRIRTYALIFSSLSLASIILNLFQHYNFAYMGEKLTKRVRLHMLEKILTFETAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVTIAMIMGLVVAWKLALVMIAVQPLTILCFYTRKVLLSTLTTNFVKAQNDSTQIAVEAVYNHRIVTSFGSIRKVLQVFDEAQEAPRKEARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVEKGEISAGAVFKTFFILVSTGKVIAEAGSMTSDLAKSSTAIASVFEILDRKSLIPNPKGGDGSSGLKLEKISGKIELKNVDFAYPSRSENLILRKFSLEVKAGSSIGLVGKSGCGKSTVIALIQRFYDVERGSVKVDGIDMRELDIHWYRQQTALVSQEPVIYSGTIRDNILFGKQDATENEVVEAARAANAHEFISSLKDGYDTECGERGVQLSGGQKQRIAIARAIIRNPKILLLDEATSALDVQSEQVVQEALDRIMVGRTTIVVAHRLNTIKNLHSIAYVADGKVVEQGSYAHLKHIKGAFFNLAIRQQT 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00548 1241 ProSitePatterns ABC transporters family signature. 504 518 IPR017871 GO:0005524
Bva03g00548 1241 CDD ABC_MTABC3_MDL1_MDL2 1002 1239 - -
Bva03g00548 1241 CDD ABC_6TM_Pgp_ABCB1_D1_like 34 338 - -
Bva03g00548 1241 Pfam ABC transporter 383 532 IPR003439 GO:0005524
Bva03g00548 1241 Pfam ABC transporter transmembrane region 36 303 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva03g00548 1241 Pfam ABC transporter transmembrane region 677 946 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva03g00548 1241 Gene3D - 992 1241 IPR027417 -
Bva03g00548 1241 SUPERFAMILY ABC transporter transmembrane region 22 349 IPR036640 GO:0005524|GO:0016021
Bva03g00548 1241 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 35 330 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva03g00548 1241 SMART AAA_5 1029 1221 IPR003593 -
Bva03g00548 1241 SMART AAA_5 392 578 IPR003593 -
Bva03g00548 1241 Pfam ABC transporter 1020 1169 IPR003439 GO:0005524
Bva03g00548 1241 MobiDBLite consensus disorder prediction 630 654 - -
Bva03g00548 1241 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 365 601 IPR003439 GO:0005524
Bva03g00548 1241 Gene3D ABC transporter type 1, transmembrane domain 22 905 IPR036640 GO:0005524|GO:0016021
Bva03g00548 1241 ProSitePatterns ABC transporters family signature. 1141 1155 IPR017871 GO:0005524
Bva03g00548 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 993 1239 IPR027417 -
Bva03g00548 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 603 IPR027417 -
Bva03g00548 1241 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 676 963 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva03g00548 1241 CDD ABC_MTABC3_MDL1_MDL2 366 603 - -
Bva03g00548 1241 Gene3D - 355 604 IPR027417 -
Bva03g00548 1241 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 19 1239 IPR039421 -
Bva03g00548 1241 PANTHER ABC TRANSPORTER B FAMILY MEMBER 8-RELATED 19 1239 - -
Bva03g00548 1241 SUPERFAMILY ABC transporter transmembrane region 659 977 IPR036640 GO:0005524|GO:0016021
Bva03g00548 1241 CDD ABC_6TM_Pgp_ABCB1_D2_like 665 981 - -
Bva03g00548 1241 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1002 1238 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00548 Bva-Chr3 3177374 3183690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00548 39 604 Calmodulin-binding Proteins AT2G36910 35.614 4.36e-105 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00548 K05658 - gmx:100801088 1993.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00548 03 3177374 3183690 Bva03g00548 03 3177374 3183690 ECH