Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00523 ATGGAAAAGAGCTGGATTCtgggttttcttcttctgctctTCCACCATTTGACTGCAGCAGAACCTGCCTTTGGTATCGGCGGCGTAGTTGGTGTTGGTGTTAGTGTTGGAATTGGCAATGGTGGTGTGGTTTGGGTTGGCGGCGGCATCAACAGCCCAGAGCCACCGGGATCTTCAGTGCCGAGGCTCGACAGAGCTTACACGGCTCTGCAGGCTTGGAAATCTGCAATTACTGATGACCCATTAAGGATTTTAGATAGTTGGAATGGTTCTGACGTGTGTTCTTATAAAGGGGTGTTTTGTGCAGATGCTCAAGATGTAATGGGTGCTTCAATTGGTCCTTTTGTTGCAGGAATAGATCTCAACCATGCGAATCTCCAAGGAACTCTTGTAAAAGAGCTATCTTTACTCGCTGAAATGTCTCTTCTTCACCTTAACAGTAACAGATTTTCGGGCATGGTTCCTGACACATTCAGAGACCTCTCGTCTCTCGAAGAGTTGGACCTCAGCAACAACCAGTTCTCAGGCTCTTTTCCCATGGTTACTTTGTACATGCCAAGTCTCGTTTACTTAGACCTCAGATTCAACTCTTTCTCTGGTCCACTGCCTGAAGACCTCTTCAACAAGAAACTGGATGCAATTTTCCTCAACAACAACCATTTCACAGGTGAAATTCCCCAGAATTTGGGTAATTCCCCTGCTTCTGTCATCAATTTAGCCAACAACAAGCTCAGTGGAAACATCCCTTTTAGTCTTGGCTTCATGGGTTCTAGACTAAGGGAGATCTTGTTTCTCAATAACCAGTTAACAGGCTGCATTCCCGAGGGTGTTGGCATCTTCACAGAGATGCAAGTTCTGGATGTTAGCTCTAATTCACTCATGGGTCATTTACCAGACACATTATCTTGTCTGCAAGACATAGAAGTTCTCAACTTGGCACATAACAAGCTTTCTGGGGAATTACCAGATGTTCTCTGCACTCTAAGAAGCCTGATGAATCTAACTGTTGCgtacaatttcttttctggGTTCAGCCAAGAGTGCTCAAGGCTTTCATTCAGAAATGTAGGCTTCGATTTCTCACTTAACTGCATTCCAGGGAGGGACATGCAGAGGCCCCAACCAGATTGCTCTGTAATTCCTGGTGGTAGCTTAAATTGTCTGAGAATCCCGACTCCAAAGCCTCTTGTTTGTGGTTCACTGGGTTTAAGCAGTAGCAGCACCAAGAAAATTAATCCCAGTTCATCTTCCCCTTG 1256 0.4403 MEKSWILGFLLLLFHHLTAAEPAFGIGGVVGVGVSVGIGNGGVVWVGGGINSPEPPGSSVPRLDRAYTALQAWKSAITDDPLRILDSWNGSDVCSYKGVFCADAQDVMGASIGPFVAGIDLNHANLQGTLVKELSLLAEMSLLHLNSNRFSGMVPDTFRDLSSLEELDLSNNQFSGSFPMVTLYMPSLVYLDLRFNSFSGPLPEDLFNKKLDAIFLNNNHFTGEIPQNLGNSPASVINLANNKLSGNIPFSLGFMGSRLREILFLNNQLTGCIPEGVGIFTEMQVLDVSSNSLMGHLPDTLSCLQDIEVLNLAHNKLSGELPDVLCTLRSLMNLTVAYNFFSGFSQECSRLSFRNVGFDFSLNCIPGRDMQRPQPDCSVIPGGSLNCLRIPTPKPLVCGSLGLSSSSTKKINPSSSSP 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00523 418 SUPERFAMILY L domain-like 67 352 - -
Bva03g00523 418 Gene3D Ribonuclease Inhibitor 232 356 IPR032675 -
Bva03g00523 418 Gene3D Ribonuclease Inhibitor 64 231 IPR032675 -
Bva03g00523 418 SMART LRR_typ_2 280 303 IPR003591 -
Bva03g00523 418 SMART LRR_typ_2 304 328 IPR003591 -
Bva03g00523 418 SMART LRR_typ_2 161 180 IPR003591 -
Bva03g00523 418 SMART LRR_typ_2 137 160 IPR003591 -
Bva03g00523 418 SMART LRR_typ_2 185 209 IPR003591 -
Bva03g00523 418 Pfam Leucine rich repeat N-terminal domain 66 101 IPR013210 -
Bva03g00523 418 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 418 - -
Bva03g00523 418 Pfam Leucine rich repeat 142 197 IPR001611 GO:0005515
Bva03g00523 418 PANTHER LRR/EXTENSIN 1 418 - -
Bva03g00523 418 PRINTS Leucine-rich repeat signature 304 317 - -
Bva03g00523 418 PRINTS Leucine-rich repeat signature 164 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00523 Bva-Chr3 3043285 3044953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00523 61 409 Leucine-rich Repeat extension Gene Families AT3G24480 49.570 2.13e-104 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00523 - - qsu:112008913 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00523 03 3043285 3044953 Bva03g00523 03 3043285 3044953 ECH